Strain Fitness in Serratia liquefaciens MT49 around IAI46_14350

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14340 and IAI46_14345 are separated by 38 nucleotidesIAI46_14345 and IAI46_14350 are separated by 65 nucleotidesIAI46_14350 and IAI46_14355 are separated by 348 nucleotides IAI46_14340: IAI46_14340 - glycoside hydrolase family 18 protein, at 3,042,748 to 3,044,028 _14340 IAI46_14345: IAI46_14345 - DUF1315 family protein, at 3,044,067 to 3,044,339 _14345 IAI46_14350: IAI46_14350 - peptide-methionine (R)-S-oxide reductase MsrB, at 3,044,405 to 3,044,818 _14350 IAI46_14355: IAI46_14355 - glyceraldehyde-3-phosphate dehydrogenase, at 3,045,167 to 3,046,162 _14355 Position (kb) 3044 3045Strain fitness (log2 ratio) -2 -1 0 1at 3043.412 kb on - strand, within IAI46_14340at 3043.429 kb on + strand, within IAI46_14340at 3043.429 kb on + strand, within IAI46_14340at 3043.430 kb on - strand, within IAI46_14340at 3043.540 kb on + strand, within IAI46_14340at 3043.541 kb on - strand, within IAI46_14340at 3043.541 kb on - strand, within IAI46_14340at 3043.572 kb on - strand, within IAI46_14340at 3043.676 kb on - strand, within IAI46_14340at 3043.739 kb on - strand, within IAI46_14340at 3043.739 kb on - strand, within IAI46_14340at 3043.748 kb on - strand, within IAI46_14340at 3043.772 kb on + strand, within IAI46_14340at 3043.877 kb on - strand, within IAI46_14340at 3043.877 kb on - strand, within IAI46_14340at 3043.912 kb on + strandat 3043.912 kb on + strandat 3043.955 kb on - strandat 3044.160 kb on - strand, within IAI46_14345at 3044.296 kb on + strand, within IAI46_14345at 3044.353 kb on + strandat 3044.581 kb on - strand, within IAI46_14350at 3044.641 kb on - strand, within IAI46_14350at 3044.641 kb on - strand, within IAI46_14350at 3044.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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3,043,412 - IAI46_14340 0.52 -0.2
3,043,429 + IAI46_14340 0.53 +0.1
3,043,429 + IAI46_14340 0.53 +1.1
3,043,430 - IAI46_14340 0.53 +0.1
3,043,540 + IAI46_14340 0.62 +0.6
3,043,541 - IAI46_14340 0.62 -0.3
3,043,541 - IAI46_14340 0.62 +0.7
3,043,572 - IAI46_14340 0.64 -0.3
3,043,676 - IAI46_14340 0.72 +0.3
3,043,739 - IAI46_14340 0.77 -0.6
3,043,739 - IAI46_14340 0.77 +0.8
3,043,748 - IAI46_14340 0.78 +0.2
3,043,772 + IAI46_14340 0.80 +0.1
3,043,877 - IAI46_14340 0.88 +0.4
3,043,877 - IAI46_14340 0.88 +1.2
3,043,912 + -0.8
3,043,912 + +0.3
3,043,955 - +0.3
3,044,160 - IAI46_14345 0.34 -2.0
3,044,296 + IAI46_14345 0.84 +0.9
3,044,353 + -0.7
3,044,581 - IAI46_14350 0.43 +0.6
3,044,641 - IAI46_14350 0.57 -1.4
3,044,641 - IAI46_14350 0.57 +0.7
3,044,960 - +0.7

Or see this region's nucleotide sequence