Strain Fitness in Serratia liquefaciens MT49 around IAI46_14030

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14020 and IAI46_14025 overlap by 1 nucleotidesIAI46_14025 and IAI46_14030 are separated by 15 nucleotidesIAI46_14030 and IAI46_14035 are separated by 3 nucleotides IAI46_14020: IAI46_14020 - anthranilate synthase component 1, at 2,977,290 to 2,978,849 _14020 IAI46_14025: IAI46_14025 - glutamine amidotransferase, at 2,978,849 to 2,979,430 _14025 IAI46_14030: IAI46_14030 - anthranilate phosphoribosyltransferase, at 2,979,446 to 2,980,444 _14030 IAI46_14035: IAI46_14035 - bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF, at 2,980,448 to 2,981,809 _14035 Position (kb) 2979 2980 2981Strain fitness (log2 ratio) -1 0 1 2at 2978.536 kb on - strand, within IAI46_14020at 2978.546 kb on + strand, within IAI46_14020at 2978.547 kb on - strand, within IAI46_14020at 2978.576 kb on + strand, within IAI46_14020at 2978.649 kb on + strand, within IAI46_14020at 2978.681 kb on + strand, within IAI46_14020at 2978.682 kb on - strand, within IAI46_14020at 2978.682 kb on - strand, within IAI46_14020at 2978.701 kb on - strandat 2978.744 kb on - strandat 2978.940 kb on - strand, within IAI46_14025at 2979.429 kb on - strandat 2979.470 kb on + strandat 2979.659 kb on + strand, within IAI46_14030at 2979.709 kb on + strand, within IAI46_14030at 2979.710 kb on - strand, within IAI46_14030at 2979.882 kb on + strand, within IAI46_14030at 2979.937 kb on - strand, within IAI46_14030at 2979.973 kb on - strand, within IAI46_14030at 2980.027 kb on + strand, within IAI46_14030at 2980.283 kb on - strand, within IAI46_14030at 2980.442 kb on + strandat 2980.801 kb on + strand, within IAI46_14035at 2980.835 kb on + strand, within IAI46_14035at 2981.108 kb on + strand, within IAI46_14035at 2981.166 kb on + strand, within IAI46_14035at 2981.318 kb on + strand, within IAI46_14035at 2981.379 kb on + strand, within IAI46_14035

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,978,536 - IAI46_14020 0.80 -0.2
2,978,546 + IAI46_14020 0.81 -1.0
2,978,547 - IAI46_14020 0.81 -0.5
2,978,576 + IAI46_14020 0.82 +0.9
2,978,649 + IAI46_14020 0.87 +0.3
2,978,681 + IAI46_14020 0.89 +0.1
2,978,682 - IAI46_14020 0.89 +1.3
2,978,682 - IAI46_14020 0.89 +1.0
2,978,701 - +0.3
2,978,744 - -0.1
2,978,940 - IAI46_14025 0.16 -0.6
2,979,429 - +0.5
2,979,470 + -0.1
2,979,659 + IAI46_14030 0.21 +0.7
2,979,709 + IAI46_14030 0.26 +0.8
2,979,710 - IAI46_14030 0.26 -1.0
2,979,882 + IAI46_14030 0.44 +0.7
2,979,937 - IAI46_14030 0.49 -0.6
2,979,973 - IAI46_14030 0.53 -0.1
2,980,027 + IAI46_14030 0.58 +0.6
2,980,283 - IAI46_14030 0.84 +0.3
2,980,442 + +1.8
2,980,801 + IAI46_14035 0.26 -0.3
2,980,835 + IAI46_14035 0.28 -0.1
2,981,108 + IAI46_14035 0.48 +0.8
2,981,166 + IAI46_14035 0.53 +0.1
2,981,318 + IAI46_14035 0.64 +0.4
2,981,379 + IAI46_14035 0.68 +0.7

Or see this region's nucleotide sequence