Strain Fitness in Serratia liquefaciens MT49 around IAI46_12465

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12455 and IAI46_12460 overlap by 4 nucleotidesIAI46_12460 and IAI46_12465 are separated by 42 nucleotidesIAI46_12465 and IAI46_12470 are separated by 41 nucleotides IAI46_12455: IAI46_12455 - FCD domain-containing protein, at 2,646,785 to 2,647,525 _12455 IAI46_12460: IAI46_12460 - fumarylacetoacetate hydrolase family protein, at 2,647,522 to 2,648,367 _12460 IAI46_12465: IAI46_12465 - aldehyde dehydrogenase family protein, at 2,648,410 to 2,649,897 _12465 IAI46_12470: IAI46_12470 - VOC family protein, at 2,649,939 to 2,650,937 _12470 Position (kb) 2648 2649 2650Strain fitness (log2 ratio) -3 -2 -1 0 1at 2647.443 kb on - strand, within IAI46_12455at 2647.488 kb on + strandat 2647.654 kb on - strand, within IAI46_12460at 2647.891 kb on + strand, within IAI46_12460at 2647.982 kb on - strand, within IAI46_12460at 2648.712 kb on - strand, within IAI46_12465at 2648.770 kb on - strand, within IAI46_12465at 2648.770 kb on - strand, within IAI46_12465at 2648.865 kb on + strand, within IAI46_12465at 2648.865 kb on + strand, within IAI46_12465at 2648.865 kb on + strand, within IAI46_12465at 2648.910 kb on + strand, within IAI46_12465at 2649.282 kb on + strand, within IAI46_12465at 2649.337 kb on + strand, within IAI46_12465at 2649.510 kb on - strand, within IAI46_12465at 2649.547 kb on + strand, within IAI46_12465at 2649.547 kb on + strand, within IAI46_12465at 2649.762 kb on - strandat 2649.862 kb on + strandat 2649.963 kb on + strandat 2650.042 kb on - strand, within IAI46_12470at 2650.274 kb on + strand, within IAI46_12470at 2650.315 kb on + strand, within IAI46_12470at 2650.316 kb on - strand, within IAI46_12470at 2650.316 kb on - strand, within IAI46_12470at 2650.476 kb on + strand, within IAI46_12470at 2650.476 kb on + strand, within IAI46_12470at 2650.476 kb on + strand, within IAI46_12470at 2650.582 kb on - strand, within IAI46_12470at 2650.583 kb on + strand, within IAI46_12470at 2650.696 kb on - strand, within IAI46_12470at 2650.728 kb on - strand, within IAI46_12470at 2650.810 kb on + strand, within IAI46_12470at 2650.810 kb on + strand, within IAI46_12470

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,647,443 - IAI46_12455 0.89 +0.5
2,647,488 + +0.1
2,647,654 - IAI46_12460 0.16 -1.7
2,647,891 + IAI46_12460 0.44 -0.8
2,647,982 - IAI46_12460 0.54 +0.5
2,648,712 - IAI46_12465 0.20 +0.1
2,648,770 - IAI46_12465 0.24 +0.7
2,648,770 - IAI46_12465 0.24 +1.2
2,648,865 + IAI46_12465 0.31 -0.7
2,648,865 + IAI46_12465 0.31 +1.5
2,648,865 + IAI46_12465 0.31 +0.7
2,648,910 + IAI46_12465 0.34 +0.4
2,649,282 + IAI46_12465 0.59 +0.8
2,649,337 + IAI46_12465 0.62 +0.4
2,649,510 - IAI46_12465 0.74 -0.5
2,649,547 + IAI46_12465 0.76 +0.5
2,649,547 + IAI46_12465 0.76 +0.5
2,649,762 - -2.8
2,649,862 + +0.8
2,649,963 + +0.2
2,650,042 - IAI46_12470 0.10 +0.0
2,650,274 + IAI46_12470 0.34 +0.9
2,650,315 + IAI46_12470 0.38 +0.3
2,650,316 - IAI46_12470 0.38 +0.9
2,650,316 - IAI46_12470 0.38 -0.1
2,650,476 + IAI46_12470 0.54 +0.5
2,650,476 + IAI46_12470 0.54 +0.9
2,650,476 + IAI46_12470 0.54 -1.8
2,650,582 - IAI46_12470 0.64 +0.7
2,650,583 + IAI46_12470 0.64 -0.6
2,650,696 - IAI46_12470 0.76 -2.0
2,650,728 - IAI46_12470 0.79 +0.2
2,650,810 + IAI46_12470 0.87 -0.2
2,650,810 + IAI46_12470 0.87 -0.2

Or see this region's nucleotide sequence