Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10810 and IAI46_10815 are separated by 49 nucleotides IAI46_10815 and IAI46_10820 are separated by 211 nucleotides
IAI46_10810: IAI46_10810 - protease HtpX, at 2,285,818 to 2,286,696
_10810
IAI46_10815: IAI46_10815 - MFS transporter, at 2,286,746 to 2,288,140
_10815
IAI46_10820: IAI46_10820 - DNA-binding transcriptional regulator KdgR, at 2,288,352 to 2,289,143
_10820
Position (kb)
2286
2287
2288
2289 Strain fitness (log2 ratio)
-2
-1
0
1 at 2285.798 kb on + strand at 2285.817 kb on + strand at 2285.826 kb on + strand at 2285.828 kb on + strand at 2286.685 kb on + strand at 2286.695 kb on - strand at 2286.927 kb on - strand, within IAI46_10815 at 2287.359 kb on - strand, within IAI46_10815 at 2287.439 kb on + strand, within IAI46_10815 at 2287.575 kb on + strand, within IAI46_10815 at 2287.575 kb on + strand, within IAI46_10815 at 2287.575 kb on + strand, within IAI46_10815 at 2287.746 kb on + strand, within IAI46_10815 at 2287.750 kb on + strand, within IAI46_10815 at 2287.751 kb on - strand, within IAI46_10815 at 2287.893 kb on + strand, within IAI46_10815 at 2287.893 kb on + strand, within IAI46_10815 at 2287.893 kb on + strand, within IAI46_10815 at 2288.069 kb on - strand at 2288.129 kb on - strand at 2288.174 kb on + strand at 2288.175 kb on - strand at 2288.175 kb on - strand at 2288.183 kb on - strand at 2288.295 kb on - strand at 2288.351 kb on + strand at 2288.624 kb on + strand, within IAI46_10820 at 2288.710 kb on - strand, within IAI46_10820 at 2288.710 kb on - strand, within IAI46_10820 at 2288.717 kb on + strand, within IAI46_10820 at 2288.718 kb on - strand, within IAI46_10820 at 2288.733 kb on + strand, within IAI46_10820 at 2288.734 kb on - strand, within IAI46_10820 at 2288.748 kb on + strand, within IAI46_10820 at 2288.749 kb on - strand, within IAI46_10820 at 2288.859 kb on - strand, within IAI46_10820 at 2288.975 kb on + strand, within IAI46_10820 at 2289.049 kb on - strand, within IAI46_10820 at 2289.072 kb on + strand at 2289.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 2,285,798 + -2.4 2,285,817 + +0.4 2,285,826 + +0.1 2,285,828 + +0.5 2,286,685 + -0.1 2,286,695 - +1.0 2,286,927 - IAI46_10815 0.13 +0.2 2,287,359 - IAI46_10815 0.44 +0.3 2,287,439 + IAI46_10815 0.50 -1.0 2,287,575 + IAI46_10815 0.59 +0.3 2,287,575 + IAI46_10815 0.59 +0.6 2,287,575 + IAI46_10815 0.59 +0.5 2,287,746 + IAI46_10815 0.72 -0.4 2,287,750 + IAI46_10815 0.72 +1.3 2,287,751 - IAI46_10815 0.72 +0.4 2,287,893 + IAI46_10815 0.82 -0.5 2,287,893 + IAI46_10815 0.82 -0.0 2,287,893 + IAI46_10815 0.82 +0.3 2,288,069 - +0.2 2,288,129 - +0.3 2,288,174 + +1.4 2,288,175 - -0.1 2,288,175 - +1.0 2,288,183 - +0.9 2,288,295 - +1.4 2,288,351 + -0.1 2,288,624 + IAI46_10820 0.34 +1.1 2,288,710 - IAI46_10820 0.45 -0.5 2,288,710 - IAI46_10820 0.45 -0.5 2,288,717 + IAI46_10820 0.46 +0.3 2,288,718 - IAI46_10820 0.46 -1.3 2,288,733 + IAI46_10820 0.48 -0.8 2,288,734 - IAI46_10820 0.48 -1.6 2,288,748 + IAI46_10820 0.50 +1.3 2,288,749 - IAI46_10820 0.50 -0.5 2,288,859 - IAI46_10820 0.64 +0.7 2,288,975 + IAI46_10820 0.79 -0.4 2,289,049 - IAI46_10820 0.88 -0.7 2,289,072 + +1.3 2,289,133 - +0.7
Or see this region's nucleotide sequence