Strain Fitness in Serratia liquefaciens MT49 around IAI46_09500

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09495 and IAI46_09500 overlap by 1 nucleotidesIAI46_09500 and IAI46_09505 overlap by 8 nucleotidesIAI46_09505 and IAI46_09510 are separated by 87 nucleotides IAI46_09495: IAI46_09495 - hypothetical protein, at 2,013,427 to 2,015,922 _09495 IAI46_09500: IAI46_09500 - hypothetical protein, at 2,015,922 to 2,016,395 _09500 IAI46_09505: IAI46_09505 - hypothetical protein, at 2,016,388 to 2,016,879 _09505 IAI46_09510: IAI46_09510 - hypothetical protein, at 2,016,967 to 2,019,723 _09510 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -2 -1 0 1at 2014.957 kb on + strand, within IAI46_09495at 2014.957 kb on + strand, within IAI46_09495at 2014.957 kb on + strand, within IAI46_09495at 2014.957 kb on + strand, within IAI46_09495at 2014.958 kb on - strand, within IAI46_09495at 2014.958 kb on - strand, within IAI46_09495at 2014.991 kb on + strand, within IAI46_09495at 2014.992 kb on - strand, within IAI46_09495at 2014.992 kb on - strand, within IAI46_09495at 2014.992 kb on - strand, within IAI46_09495at 2015.026 kb on - strand, within IAI46_09495at 2015.056 kb on + strand, within IAI46_09495at 2015.056 kb on + strand, within IAI46_09495at 2015.056 kb on + strand, within IAI46_09495at 2015.099 kb on - strand, within IAI46_09495at 2015.123 kb on + strand, within IAI46_09495at 2015.124 kb on - strand, within IAI46_09495at 2015.125 kb on + strand, within IAI46_09495at 2015.125 kb on + strand, within IAI46_09495at 2015.126 kb on - strand, within IAI46_09495at 2015.126 kb on - strand, within IAI46_09495at 2015.134 kb on - strand, within IAI46_09495at 2015.167 kb on - strand, within IAI46_09495at 2015.167 kb on - strand, within IAI46_09495at 2015.171 kb on - strand, within IAI46_09495at 2015.276 kb on - strand, within IAI46_09495at 2015.311 kb on - strand, within IAI46_09495at 2015.312 kb on + strand, within IAI46_09495at 2015.312 kb on + strand, within IAI46_09495at 2015.313 kb on - strand, within IAI46_09495at 2015.313 kb on - strand, within IAI46_09495at 2015.313 kb on - strand, within IAI46_09495at 2015.313 kb on - strand, within IAI46_09495at 2015.318 kb on - strand, within IAI46_09495at 2015.356 kb on - strand, within IAI46_09495at 2015.460 kb on + strand, within IAI46_09495at 2015.523 kb on - strand, within IAI46_09495at 2015.554 kb on - strand, within IAI46_09495at 2015.711 kb on + strandat 2015.741 kb on - strandat 2015.747 kb on - strandat 2015.806 kb on + strandat 2015.824 kb on - strandat 2015.903 kb on + strandat 2016.135 kb on - strand, within IAI46_09500at 2016.163 kb on + strand, within IAI46_09500at 2016.164 kb on - strand, within IAI46_09500at 2016.187 kb on - strand, within IAI46_09500at 2016.229 kb on + strand, within IAI46_09500at 2016.279 kb on - strand, within IAI46_09500at 2016.287 kb on + strand, within IAI46_09500at 2016.372 kb on - strandat 2016.429 kb on - strandat 2016.533 kb on + strand, within IAI46_09505at 2016.534 kb on + strand, within IAI46_09505at 2016.534 kb on - strand, within IAI46_09505at 2016.804 kb on + strand, within IAI46_09505at 2016.832 kb on + strandat 2016.832 kb on + strandat 2016.833 kb on - strandat 2016.833 kb on - strandat 2016.833 kb on - strandat 2016.841 kb on + strandat 2016.842 kb on - strandat 2016.900 kb on + strandat 2017.024 kb on - strandat 2017.099 kb on + strandat 2017.099 kb on + strandat 2017.182 kb on + strandat 2017.182 kb on + strandat 2017.185 kb on + strandat 2017.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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2,014,957 + IAI46_09495 0.61 +1.0
2,014,957 + IAI46_09495 0.61 -0.8
2,014,957 + IAI46_09495 0.61 -0.0
2,014,957 + IAI46_09495 0.61 +0.9
2,014,958 - IAI46_09495 0.61 +1.1
2,014,958 - IAI46_09495 0.61 +0.5
2,014,991 + IAI46_09495 0.63 +0.2
2,014,992 - IAI46_09495 0.63 -0.0
2,014,992 - IAI46_09495 0.63 +1.1
2,014,992 - IAI46_09495 0.63 +1.4
2,015,026 - IAI46_09495 0.64 +0.6
2,015,056 + IAI46_09495 0.65 -0.2
2,015,056 + IAI46_09495 0.65 -0.6
2,015,056 + IAI46_09495 0.65 +0.1
2,015,099 - IAI46_09495 0.67 -0.3
2,015,123 + IAI46_09495 0.68 +0.4
2,015,124 - IAI46_09495 0.68 -1.1
2,015,125 + IAI46_09495 0.68 +0.2
2,015,125 + IAI46_09495 0.68 +0.1
2,015,126 - IAI46_09495 0.68 +0.5
2,015,126 - IAI46_09495 0.68 -0.1
2,015,134 - IAI46_09495 0.68 -0.1
2,015,167 - IAI46_09495 0.70 +0.3
2,015,167 - IAI46_09495 0.70 +0.2
2,015,171 - IAI46_09495 0.70 -0.1
2,015,276 - IAI46_09495 0.74 -0.3
2,015,311 - IAI46_09495 0.75 -0.2
2,015,312 + IAI46_09495 0.76 -0.1
2,015,312 + IAI46_09495 0.76 +0.7
2,015,313 - IAI46_09495 0.76 -0.3
2,015,313 - IAI46_09495 0.76 +1.3
2,015,313 - IAI46_09495 0.76 -0.3
2,015,313 - IAI46_09495 0.76 +0.9
2,015,318 - IAI46_09495 0.76 +0.5
2,015,356 - IAI46_09495 0.77 +0.1
2,015,460 + IAI46_09495 0.81 +1.1
2,015,523 - IAI46_09495 0.84 +0.1
2,015,554 - IAI46_09495 0.85 -2.1
2,015,711 + +0.9
2,015,741 - +0.7
2,015,747 - -0.6
2,015,806 + +1.2
2,015,824 - +1.1
2,015,903 + +1.6
2,016,135 - IAI46_09500 0.45 +1.4
2,016,163 + IAI46_09500 0.51 +0.1
2,016,164 - IAI46_09500 0.51 +0.8
2,016,187 - IAI46_09500 0.56 +0.4
2,016,229 + IAI46_09500 0.65 +0.3
2,016,279 - IAI46_09500 0.75 +0.1
2,016,287 + IAI46_09500 0.77 +0.9
2,016,372 - +0.0
2,016,429 - +0.5
2,016,533 + IAI46_09505 0.29 -0.5
2,016,534 + IAI46_09505 0.30 -2.6
2,016,534 - IAI46_09505 0.30 +0.3
2,016,804 + IAI46_09505 0.85 -0.2
2,016,832 + +0.3
2,016,832 + -0.2
2,016,833 - -0.2
2,016,833 - +0.8
2,016,833 - -0.7
2,016,841 + +0.6
2,016,842 - -0.9
2,016,900 + -1.3
2,017,024 - +1.0
2,017,099 + -0.2
2,017,099 + +1.1
2,017,182 + -0.4
2,017,182 + -0.8
2,017,185 + +0.8
2,017,185 + -1.2

Or see this region's nucleotide sequence