Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_07480 and IAI46_07485 are separated by 60 nucleotides IAI46_07485 and IAI46_07490 are separated by 40 nucleotides IAI46_07490 and IAI46_07495 are separated by 49 nucleotides
IAI46_07480: IAI46_07480 - MFS transporter, at 1,580,605 to 1,582,029
_07480
IAI46_07485: IAI46_07485 - FMN-binding negative transcriptional regulator, at 1,582,090 to 1,582,722
_07485
IAI46_07490: IAI46_07490 - DNA-binding protein YbiB, at 1,582,763 to 1,583,722
_07490
IAI46_07495: IAI46_07495 - peptidase M3, at 1,583,772 to 1,585,628
_07495
Position (kb)
1582
1583
1584 Strain fitness (log2 ratio)
-2
-1
0
1 at 1581.949 kb on + strand at 1581.950 kb on - strand at 1582.028 kb on - strand at 1582.045 kb on + strand at 1582.046 kb on - strand at 1582.046 kb on - strand at 1582.051 kb on + strand at 1582.067 kb on + strand at 1582.088 kb on + strand at 1582.088 kb on + strand at 1582.088 kb on + strand at 1582.088 kb on + strand at 1582.088 kb on + strand at 1582.089 kb on - strand at 1582.089 kb on - strand at 1582.089 kb on - strand at 1582.089 kb on - strand at 1582.089 kb on - strand at 1582.093 kb on + strand at 1582.093 kb on + strand at 1582.093 kb on + strand at 1582.339 kb on + strand, within IAI46_07485 at 1582.339 kb on + strand, within IAI46_07485 at 1582.340 kb on - strand, within IAI46_07485 at 1582.341 kb on + strand, within IAI46_07485 at 1582.341 kb on + strand, within IAI46_07485 at 1582.341 kb on + strand, within IAI46_07485 at 1582.342 kb on - strand, within IAI46_07485 at 1582.342 kb on - strand, within IAI46_07485 at 1582.358 kb on - strand, within IAI46_07485 at 1582.403 kb on - strand, within IAI46_07485 at 1582.412 kb on + strand, within IAI46_07485 at 1582.412 kb on + strand, within IAI46_07485 at 1582.412 kb on + strand, within IAI46_07485 at 1582.541 kb on - strand, within IAI46_07485 at 1582.541 kb on - strand, within IAI46_07485 at 1582.542 kb on + strand, within IAI46_07485 at 1582.542 kb on + strand, within IAI46_07485 at 1582.542 kb on + strand, within IAI46_07485 at 1582.543 kb on - strand, within IAI46_07485 at 1582.543 kb on - strand, within IAI46_07485 at 1582.726 kb on - strand at 1582.726 kb on - strand at 1582.726 kb on - strand at 1582.769 kb on + strand at 1582.916 kb on - strand, within IAI46_07490 at 1583.014 kb on - strand, within IAI46_07490 at 1583.014 kb on - strand, within IAI46_07490 at 1583.024 kb on + strand, within IAI46_07490 at 1583.024 kb on + strand, within IAI46_07490 at 1583.024 kb on + strand, within IAI46_07490 at 1583.025 kb on - strand, within IAI46_07490 at 1583.025 kb on - strand, within IAI46_07490 at 1583.097 kb on + strand, within IAI46_07490 at 1583.296 kb on + strand, within IAI46_07490 at 1583.296 kb on + strand, within IAI46_07490 at 1583.296 kb on + strand, within IAI46_07490 at 1583.308 kb on + strand, within IAI46_07490 at 1583.492 kb on + strand, within IAI46_07490 at 1583.492 kb on + strand, within IAI46_07490 at 1583.492 kb on + strand, within IAI46_07490 at 1583.493 kb on - strand, within IAI46_07490 at 1583.733 kb on + strand at 1583.744 kb on - strand at 1583.862 kb on - strand at 1583.917 kb on - strand at 1583.918 kb on + strand at 1583.919 kb on - strand at 1584.121 kb on - strand, within IAI46_07495 at 1584.123 kb on - strand, within IAI46_07495 at 1584.232 kb on - strand, within IAI46_07495 at 1584.380 kb on + strand, within IAI46_07495 at 1584.549 kb on + strand, within IAI46_07495 at 1584.549 kb on + strand, within IAI46_07495 at 1584.549 kb on + strand, within IAI46_07495 at 1584.549 kb on + strand, within IAI46_07495 at 1584.550 kb on - strand, within IAI46_07495 at 1584.594 kb on - strand, within IAI46_07495 at 1584.660 kb on + strand, within IAI46_07495 at 1584.675 kb on - strand, within IAI46_07495 at 1584.699 kb on - strand, within IAI46_07495
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 1,581,949 + -0.6 1,581,950 - +0.9 1,582,028 - -0.5 1,582,045 + +1.3 1,582,046 - +0.2 1,582,046 - +0.7 1,582,051 + -0.4 1,582,067 + -0.7 1,582,088 + +0.1 1,582,088 + -0.4 1,582,088 + +0.4 1,582,088 + +0.3 1,582,088 + -0.3 1,582,089 - -0.3 1,582,089 - +0.4 1,582,089 - -0.0 1,582,089 - -2.2 1,582,089 - -0.0 1,582,093 + +0.7 1,582,093 + -0.3 1,582,093 + +0.4 1,582,339 + IAI46_07485 0.39 -0.9 1,582,339 + IAI46_07485 0.39 -0.2 1,582,340 - IAI46_07485 0.39 +0.5 1,582,341 + IAI46_07485 0.40 +1.3 1,582,341 + IAI46_07485 0.40 +0.4 1,582,341 + IAI46_07485 0.40 +1.4 1,582,342 - IAI46_07485 0.40 -0.6 1,582,342 - IAI46_07485 0.40 -0.4 1,582,358 - IAI46_07485 0.42 -0.2 1,582,403 - IAI46_07485 0.49 +0.3 1,582,412 + IAI46_07485 0.51 +0.1 1,582,412 + IAI46_07485 0.51 +1.0 1,582,412 + IAI46_07485 0.51 +0.1 1,582,541 - IAI46_07485 0.71 -0.1 1,582,541 - IAI46_07485 0.71 +1.0 1,582,542 + IAI46_07485 0.71 +1.6 1,582,542 + IAI46_07485 0.71 -0.3 1,582,542 + IAI46_07485 0.71 +0.2 1,582,543 - IAI46_07485 0.72 +0.2 1,582,543 - IAI46_07485 0.72 +0.6 1,582,726 - +0.6 1,582,726 - -0.0 1,582,726 - -0.1 1,582,769 + +0.3 1,582,916 - IAI46_07490 0.16 -0.3 1,583,014 - IAI46_07490 0.26 +0.8 1,583,014 - IAI46_07490 0.26 -2.0 1,583,024 + IAI46_07490 0.27 +0.4 1,583,024 + IAI46_07490 0.27 +0.1 1,583,024 + IAI46_07490 0.27 +0.8 1,583,025 - IAI46_07490 0.27 -0.1 1,583,025 - IAI46_07490 0.27 +0.2 1,583,097 + IAI46_07490 0.35 +0.2 1,583,296 + IAI46_07490 0.56 -0.1 1,583,296 + IAI46_07490 0.56 +1.1 1,583,296 + IAI46_07490 0.56 -0.6 1,583,308 + IAI46_07490 0.57 -0.4 1,583,492 + IAI46_07490 0.76 -0.4 1,583,492 + IAI46_07490 0.76 +0.5 1,583,492 + IAI46_07490 0.76 +0.7 1,583,493 - IAI46_07490 0.76 -0.2 1,583,733 + +0.5 1,583,744 - +0.3 1,583,862 - -0.4 1,583,917 - +0.5 1,583,918 + +0.1 1,583,919 - +0.0 1,584,121 - IAI46_07495 0.19 +0.1 1,584,123 - IAI46_07495 0.19 +0.8 1,584,232 - IAI46_07495 0.25 +0.6 1,584,380 + IAI46_07495 0.33 -0.3 1,584,549 + IAI46_07495 0.42 +0.4 1,584,549 + IAI46_07495 0.42 +0.7 1,584,549 + IAI46_07495 0.42 +0.5 1,584,549 + IAI46_07495 0.42 +0.6 1,584,550 - IAI46_07495 0.42 +1.0 1,584,594 - IAI46_07495 0.44 +1.0 1,584,660 + IAI46_07495 0.48 +0.7 1,584,675 - IAI46_07495 0.49 +1.2 1,584,699 - IAI46_07495 0.50 -0.2
Or see this region's nucleotide sequence