Strain Fitness in Serratia liquefaciens MT49 around IAI46_05930

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05925 and IAI46_05930 are separated by 8 nucleotidesIAI46_05930 and IAI46_05935 are separated by 38 nucleotidesIAI46_05935 and IAI46_05940 are separated by 3 nucleotides IAI46_05925: IAI46_05925 - peptidoglycan glycosyltransferase MrdB, at 1,269,458 to 1,270,570 _05925 IAI46_05930: IAI46_05930 - peptidoglycan DD-transpeptidase MrdA, at 1,270,579 to 1,272,474 _05930 IAI46_05935: IAI46_05935 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,272,513 to 1,272,983 _05935 IAI46_05940: IAI46_05940 - ribosome silencing factor, at 1,272,987 to 1,273,304 _05940 Position (kb) 1270 1271 1272 1273Strain fitness (log2 ratio) -1 0 1at 1270.581 kb on - strandat 1270.592 kb on - strandat 1270.630 kb on - strandat 1270.630 kb on - strandat 1272.502 kb on - strandat 1272.502 kb on - strandat 1272.527 kb on - strandat 1272.589 kb on - strand, within IAI46_05935at 1272.601 kb on - strand, within IAI46_05935at 1272.989 kb on - strandat 1272.989 kb on - strandat 1272.989 kb on - strandat 1273.296 kb on - strandat 1273.381 kb on - strandat 1273.381 kb on - strandat 1273.429 kb on + strandat 1273.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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1,270,581 - +0.3
1,270,592 - +0.6
1,270,630 - -0.3
1,270,630 - +0.3
1,272,502 - +0.8
1,272,502 - +1.6
1,272,527 - +1.6
1,272,589 - IAI46_05935 0.16 +0.9
1,272,601 - IAI46_05935 0.19 +0.3
1,272,989 - +0.2
1,272,989 - +1.0
1,272,989 - +0.2
1,273,296 - +0.0
1,273,381 - +0.1
1,273,381 - +0.3
1,273,429 + +0.3
1,273,430 - +0.3

Or see this region's nucleotide sequence