Strain Fitness in Serratia liquefaciens MT49 around IAI46_04330

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04325 and IAI46_04330 are separated by 85 nucleotidesIAI46_04330 and IAI46_04335 are separated by 288 nucleotides IAI46_04325: IAI46_04325 - S-methyl-5-thioribose kinase, at 926,983 to 928,182 _04325 IAI46_04330: IAI46_04330 - Hok/Gef family protein, at 928,268 to 928,420 _04330 IAI46_04335: IAI46_04335 - acyl-CoA dehydrogenase, at 928,709 to 931,165 _04335 Position (kb) 928 929Strain fitness (log2 ratio) -1 0 1at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.333 kb on + strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.334 kb on - strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.364 kb on + strand, within IAI46_04325at 927.365 kb on - strand, within IAI46_04325at 927.365 kb on - strand, within IAI46_04325at 927.367 kb on + strand, within IAI46_04325at 927.368 kb on - strand, within IAI46_04325at 927.398 kb on - strand, within IAI46_04325at 927.398 kb on - strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.420 kb on + strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.421 kb on - strand, within IAI46_04325at 927.433 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.526 kb on + strand, within IAI46_04325at 927.527 kb on - strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.578 kb on + strand, within IAI46_04325at 927.579 kb on - strand, within IAI46_04325at 927.589 kb on - strand, within IAI46_04325at 927.659 kb on + strand, within IAI46_04325at 927.660 kb on - strand, within IAI46_04325at 927.716 kb on + strand, within IAI46_04325at 927.716 kb on + strand, within IAI46_04325at 927.717 kb on - strand, within IAI46_04325at 927.736 kb on + strand, within IAI46_04325at 927.737 kb on - strand, within IAI46_04325at 927.790 kb on + strand, within IAI46_04325at 927.812 kb on + strand, within IAI46_04325at 927.992 kb on - strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.053 kb on + strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.054 kb on - strand, within IAI46_04325at 928.056 kb on + strand, within IAI46_04325at 928.056 kb on + strand, within IAI46_04325at 928.056 kb on + strand, within IAI46_04325at 928.057 kb on - strand, within IAI46_04325at 928.143 kb on + strandat 928.143 kb on + strandat 928.144 kb on - strandat 928.144 kb on - strandat 928.144 kb on - strandat 928.144 kb on - strandat 928.227 kb on + strandat 928.376 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.384 kb on + strand, within IAI46_04330at 928.385 kb on - strand, within IAI46_04330at 928.385 kb on - strand, within IAI46_04330at 928.397 kb on - strand, within IAI46_04330at 928.397 kb on - strand, within IAI46_04330at 928.453 kb on + strandat 928.506 kb on - strandat 928.506 kb on - strandat 928.531 kb on - strandat 928.540 kb on + strandat 928.587 kb on + strandat 928.588 kb on - strandat 929.008 kb on + strand, within IAI46_04335at 929.116 kb on + strand, within IAI46_04335at 929.117 kb on - strand, within IAI46_04335at 929.117 kb on - strand, within IAI46_04335at 929.117 kb on - strand, within IAI46_04335at 929.258 kb on + strand, within IAI46_04335at 929.311 kb on - strand, within IAI46_04335at 929.326 kb on + strand, within IAI46_04335at 929.347 kb on + strand, within IAI46_04335at 929.348 kb on - strand, within IAI46_04335at 929.386 kb on + strand, within IAI46_04335at 929.387 kb on - strand, within IAI46_04335

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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927,333 + IAI46_04325 0.29 +0.1
927,333 + IAI46_04325 0.29 +1.0
927,333 + IAI46_04325 0.29 -0.0
927,333 + IAI46_04325 0.29 +0.8
927,334 - IAI46_04325 0.29 +0.1
927,334 - IAI46_04325 0.29 -0.1
927,334 - IAI46_04325 0.29 +0.4
927,334 - IAI46_04325 0.29 +0.5
927,364 + IAI46_04325 0.32 +0.4
927,364 + IAI46_04325 0.32 +0.2
927,364 + IAI46_04325 0.32 +0.3
927,365 - IAI46_04325 0.32 +0.2
927,365 - IAI46_04325 0.32 -0.2
927,367 + IAI46_04325 0.32 +0.5
927,368 - IAI46_04325 0.32 +0.3
927,398 - IAI46_04325 0.35 -0.5
927,398 - IAI46_04325 0.35 +0.5
927,420 + IAI46_04325 0.36 +0.5
927,420 + IAI46_04325 0.36 -0.4
927,420 + IAI46_04325 0.36 -0.5
927,420 + IAI46_04325 0.36 -0.4
927,420 + IAI46_04325 0.36 +0.4
927,421 - IAI46_04325 0.36 -0.0
927,421 - IAI46_04325 0.36 -0.6
927,421 - IAI46_04325 0.36 +0.5
927,433 + IAI46_04325 0.38 +0.1
927,526 + IAI46_04325 0.45 +0.6
927,526 + IAI46_04325 0.45 +0.0
927,526 + IAI46_04325 0.45 +0.4
927,526 + IAI46_04325 0.45 +0.7
927,527 - IAI46_04325 0.45 -0.3
927,578 + IAI46_04325 0.50 -0.3
927,578 + IAI46_04325 0.50 +0.7
927,578 + IAI46_04325 0.50 -0.4
927,579 - IAI46_04325 0.50 +0.4
927,589 - IAI46_04325 0.51 +0.0
927,659 + IAI46_04325 0.56 +0.1
927,660 - IAI46_04325 0.56 +0.1
927,716 + IAI46_04325 0.61 -0.4
927,716 + IAI46_04325 0.61 +0.4
927,717 - IAI46_04325 0.61 +0.2
927,736 + IAI46_04325 0.63 +0.2
927,737 - IAI46_04325 0.63 -0.2
927,790 + IAI46_04325 0.67 -0.2
927,812 + IAI46_04325 0.69 -0.2
927,992 - IAI46_04325 0.84 +0.4
928,053 + IAI46_04325 0.89 +0.1
928,053 + IAI46_04325 0.89 -1.0
928,053 + IAI46_04325 0.89 +0.2
928,053 + IAI46_04325 0.89 +0.8
928,053 + IAI46_04325 0.89 +0.4
928,054 - IAI46_04325 0.89 +0.2
928,054 - IAI46_04325 0.89 +0.5
928,054 - IAI46_04325 0.89 -0.0
928,054 - IAI46_04325 0.89 -0.2
928,056 + IAI46_04325 0.89 +0.8
928,056 + IAI46_04325 0.89 -0.4
928,056 + IAI46_04325 0.89 +0.4
928,057 - IAI46_04325 0.90 +1.1
928,143 + +0.5
928,143 + -0.5
928,144 - +0.0
928,144 - +0.7
928,144 - +0.8
928,144 - +0.8
928,227 + -0.0
928,376 + IAI46_04330 0.71 -0.3
928,384 + IAI46_04330 0.76 -0.2
928,384 + IAI46_04330 0.76 -0.1
928,384 + IAI46_04330 0.76 -0.1
928,384 + IAI46_04330 0.76 -0.5
928,385 - IAI46_04330 0.76 -0.0
928,385 - IAI46_04330 0.76 -0.2
928,397 - IAI46_04330 0.84 +0.8
928,397 - IAI46_04330 0.84 +0.9
928,453 + +0.2
928,506 - -0.3
928,506 - -0.2
928,531 - -0.2
928,540 + -0.7
928,587 + -0.3
928,588 - +1.0
929,008 + IAI46_04335 0.12 +0.3
929,116 + IAI46_04335 0.17 -0.2
929,117 - IAI46_04335 0.17 +0.1
929,117 - IAI46_04335 0.17 +0.8
929,117 - IAI46_04335 0.17 +0.1
929,258 + IAI46_04335 0.22 +0.4
929,311 - IAI46_04335 0.25 +1.6
929,326 + IAI46_04335 0.25 +0.2
929,347 + IAI46_04335 0.26 +0.2
929,348 - IAI46_04335 0.26 -0.1
929,386 + IAI46_04335 0.28 -0.4
929,387 - IAI46_04335 0.28 +0.0

Or see this region's nucleotide sequence