Strain Fitness in Serratia liquefaciens MT49 around IAI46_04245

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04240 and IAI46_04245 are separated by 146 nucleotidesIAI46_04245 and IAI46_04250 are separated by 217 nucleotides IAI46_04240: IAI46_04240 - gamma-glutamyltransferase, at 911,416 to 913,002 _04240 IAI46_04245: IAI46_04245 - MurR/RpiR family transcriptional regulator, at 913,149 to 913,988 _04245 IAI46_04250: IAI46_04250 - transporter substrate-binding domain-containing protein, at 914,206 to 914,997 _04250 Position (kb) 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 912.311 kb on + strand, within IAI46_04240at 912.490 kb on + strand, within IAI46_04240at 912.491 kb on - strand, within IAI46_04240at 912.495 kb on - strand, within IAI46_04240at 912.495 kb on - strand, within IAI46_04240at 912.495 kb on - strand, within IAI46_04240at 912.534 kb on - strand, within IAI46_04240at 912.653 kb on + strand, within IAI46_04240at 912.654 kb on - strand, within IAI46_04240at 912.654 kb on - strand, within IAI46_04240at 912.658 kb on + strand, within IAI46_04240at 912.659 kb on - strand, within IAI46_04240at 912.860 kb on + strandat 912.996 kb on + strandat 912.997 kb on - strandat 913.079 kb on - strandat 913.079 kb on - strandat 913.110 kb on + strandat 913.110 kb on + strandat 913.111 kb on - strandat 913.132 kb on + strandat 913.288 kb on + strand, within IAI46_04245at 913.299 kb on - strand, within IAI46_04245at 913.338 kb on + strand, within IAI46_04245at 913.397 kb on + strand, within IAI46_04245at 913.440 kb on + strand, within IAI46_04245at 913.440 kb on + strand, within IAI46_04245at 913.441 kb on - strand, within IAI46_04245at 913.441 kb on - strand, within IAI46_04245at 913.463 kb on + strand, within IAI46_04245at 913.463 kb on + strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.482 kb on - strand, within IAI46_04245at 913.540 kb on + strand, within IAI46_04245at 913.603 kb on + strand, within IAI46_04245at 913.618 kb on + strand, within IAI46_04245at 913.688 kb on - strand, within IAI46_04245at 913.857 kb on + strand, within IAI46_04245at 913.858 kb on - strand, within IAI46_04245at 914.044 kb on + strandat 914.094 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.288 kb on + strand, within IAI46_04250at 914.427 kb on + strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.469 kb on + strand, within IAI46_04250at 914.471 kb on - strand, within IAI46_04250at 914.475 kb on - strand, within IAI46_04250at 914.475 kb on - strand, within IAI46_04250at 914.482 kb on - strand, within IAI46_04250at 914.710 kb on + strand, within IAI46_04250at 914.740 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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912,311 + IAI46_04240 0.56 +0.3
912,490 + IAI46_04240 0.68 +0.6
912,491 - IAI46_04240 0.68 +0.1
912,495 - IAI46_04240 0.68 +0.4
912,495 - IAI46_04240 0.68 -0.1
912,495 - IAI46_04240 0.68 -0.2
912,534 - IAI46_04240 0.70 +0.8
912,653 + IAI46_04240 0.78 +1.1
912,654 - IAI46_04240 0.78 -0.7
912,654 - IAI46_04240 0.78 -0.2
912,658 + IAI46_04240 0.78 +0.2
912,659 - IAI46_04240 0.78 +0.2
912,860 + -0.2
912,996 + -0.1
912,997 - +0.3
913,079 - +0.0
913,079 - +0.7
913,110 + +1.0
913,110 + +0.1
913,111 - +1.3
913,132 + -0.2
913,288 + IAI46_04245 0.17 +1.2
913,299 - IAI46_04245 0.18 +0.3
913,338 + IAI46_04245 0.23 -0.2
913,397 + IAI46_04245 0.30 +0.7
913,440 + IAI46_04245 0.35 -0.0
913,440 + IAI46_04245 0.35 +0.6
913,441 - IAI46_04245 0.35 +0.3
913,441 - IAI46_04245 0.35 +0.2
913,463 + IAI46_04245 0.37 -0.3
913,463 + IAI46_04245 0.37 -0.6
913,464 - IAI46_04245 0.38 +0.9
913,464 - IAI46_04245 0.38 -0.1
913,464 - IAI46_04245 0.38 +0.6
913,482 - IAI46_04245 0.40 +0.8
913,540 + IAI46_04245 0.47 -0.2
913,603 + IAI46_04245 0.54 +0.1
913,618 + IAI46_04245 0.56 -0.2
913,688 - IAI46_04245 0.64 -1.8
913,857 + IAI46_04245 0.84 -0.5
913,858 - IAI46_04245 0.84 +0.1
914,044 + -1.9
914,094 + -0.2
914,205 + -1.0
914,205 + +1.2
914,205 + +0.4
914,205 + +0.3
914,205 + -0.3
914,206 - +1.0
914,206 - +1.1
914,206 - -0.1
914,206 - +1.2
914,206 - +0.6
914,288 + IAI46_04250 0.10 +1.8
914,427 + IAI46_04250 0.28 -0.3
914,428 - IAI46_04250 0.28 +0.3
914,428 - IAI46_04250 0.28 +1.2
914,428 - IAI46_04250 0.28 -0.1
914,469 + IAI46_04250 0.33 -0.4
914,471 - IAI46_04250 0.33 +0.4
914,475 - IAI46_04250 0.34 -0.6
914,475 - IAI46_04250 0.34 -0.4
914,482 - IAI46_04250 0.35 -0.1
914,710 + IAI46_04250 0.64 +0.3
914,740 + IAI46_04250 0.67 +0.9
914,761 + IAI46_04250 0.70 +1.5
914,761 + IAI46_04250 0.70 +0.5
914,761 + IAI46_04250 0.70 +0.2
914,761 + IAI46_04250 0.70 +0.4
914,762 - IAI46_04250 0.70 +0.3
914,762 - IAI46_04250 0.70 -0.4
914,762 - IAI46_04250 0.70 -0.5
914,762 - IAI46_04250 0.70 +0.1
914,762 - IAI46_04250 0.70 -0.2
914,835 + IAI46_04250 0.79 +0.2
914,835 + IAI46_04250 0.79 +0.4
914,835 + IAI46_04250 0.79 +0.9
914,836 - IAI46_04250 0.80 +0.0
914,836 - IAI46_04250 0.80 +0.4
914,934 + +0.7

Or see this region's nucleotide sequence