Strain Fitness in Serratia liquefaciens MT49 around IAI46_03265

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03260 and IAI46_03265 are separated by 228 nucleotidesIAI46_03265 and IAI46_03270 are separated by 45 nucleotidesIAI46_03270 and IAI46_03275 are separated by 56 nucleotides IAI46_03260: IAI46_03260 - LPS assembly protein LptD, at 700,039 to 702,402 _03260 IAI46_03265: IAI46_03265 - co-chaperone DjlA, at 702,631 to 703,452 _03265 IAI46_03270: IAI46_03270 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 703,498 to 704,148 _03270 IAI46_03275: IAI46_03275 - RNA polymerase-associated protein RapA, at 704,205 to 707,111 _03275 Position (kb) 702 703 704Strain fitness (log2 ratio) -1 0 1 2at 702.460 kb on - strandat 702.460 kb on - strandat 702.460 kb on - strandat 702.460 kb on - strandat 702.460 kb on - strandat 702.460 kb on - strandat 702.460 kb on - strandat 702.462 kb on - strandat 702.462 kb on - strandat 702.462 kb on - strandat 702.462 kb on - strandat 702.488 kb on + strandat 702.502 kb on + strandat 702.502 kb on + strandat 702.503 kb on - strandat 702.530 kb on - strandat 702.530 kb on - strandat 702.530 kb on - strandat 702.540 kb on + strandat 702.540 kb on + strandat 702.540 kb on + strandat 702.540 kb on + strandat 702.541 kb on - strandat 702.541 kb on - strandat 702.541 kb on - strandat 702.541 kb on - strandat 702.541 kb on - strandat 702.545 kb on + strandat 702.546 kb on - strandat 702.546 kb on - strandat 702.583 kb on + strandat 702.583 kb on + strandat 702.584 kb on - strandat 702.584 kb on - strandat 702.618 kb on - strandat 702.628 kb on + strandat 702.628 kb on + strandat 702.628 kb on + strandat 702.628 kb on + strandat 702.628 kb on + strandat 702.629 kb on - strandat 702.629 kb on - strandat 702.629 kb on - strandat 702.629 kb on - strandat 702.629 kb on - strandat 702.630 kb on + strandat 702.630 kb on + strandat 702.630 kb on + strandat 702.630 kb on + strandat 702.630 kb on + strandat 702.631 kb on - strandat 702.631 kb on - strandat 702.637 kb on + strandat 702.698 kb on + strandat 702.723 kb on + strand, within IAI46_03265at 702.723 kb on + strand, within IAI46_03265at 702.724 kb on - strand, within IAI46_03265at 702.724 kb on - strand, within IAI46_03265at 702.768 kb on + strand, within IAI46_03265at 702.885 kb on + strand, within IAI46_03265at 703.023 kb on + strand, within IAI46_03265at 703.023 kb on + strand, within IAI46_03265at 703.023 kb on + strand, within IAI46_03265at 703.094 kb on + strand, within IAI46_03265at 703.094 kb on + strand, within IAI46_03265at 703.095 kb on - strand, within IAI46_03265at 703.099 kb on + strand, within IAI46_03265at 703.099 kb on + strand, within IAI46_03265at 703.100 kb on - strand, within IAI46_03265at 703.100 kb on - strand, within IAI46_03265at 703.100 kb on - strand, within IAI46_03265at 703.100 kb on - strand, within IAI46_03265at 703.262 kb on + strand, within IAI46_03265at 703.262 kb on + strand, within IAI46_03265at 703.263 kb on - strand, within IAI46_03265at 703.263 kb on - strand, within IAI46_03265at 703.263 kb on - strand, within IAI46_03265at 703.472 kb on - strandat 703.491 kb on - strandat 703.580 kb on - strand, within IAI46_03270at 703.617 kb on - strand, within IAI46_03270at 703.636 kb on - strand, within IAI46_03270at 703.656 kb on + strand, within IAI46_03270at 703.656 kb on + strand, within IAI46_03270at 703.656 kb on + strand, within IAI46_03270at 703.656 kb on + strand, within IAI46_03270at 703.657 kb on - strand, within IAI46_03270at 703.657 kb on - strand, within IAI46_03270at 703.657 kb on - strand, within IAI46_03270at 703.657 kb on - strand, within IAI46_03270at 703.819 kb on + strand, within IAI46_03270at 703.966 kb on - strand, within IAI46_03270at 704.032 kb on - strand, within IAI46_03270at 704.088 kb on + strandat 704.138 kb on + strandat 704.139 kb on - strandat 704.139 kb on - strandat 704.139 kb on - strandat 704.139 kb on - strandat 704.187 kb on + strandat 704.187 kb on + strandat 704.187 kb on + strandat 704.188 kb on - strandat 704.188 kb on - strandat 704.188 kb on - strandat 704.188 kb on - strandat 704.304 kb on + strandat 704.305 kb on - strandat 704.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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702,460 - +0.2
702,460 - +0.9
702,460 - +0.1
702,460 - +0.8
702,460 - -0.4
702,460 - +0.7
702,460 - -0.7
702,462 - +0.7
702,462 - -0.3
702,462 - +0.3
702,462 - +0.0
702,488 + +0.7
702,502 + -0.2
702,502 + +0.4
702,503 - +0.0
702,530 - -0.1
702,530 - -0.7
702,530 - -0.4
702,540 + +0.0
702,540 + -0.7
702,540 + -0.9
702,540 + -0.8
702,541 - -0.4
702,541 - +0.7
702,541 - +0.4
702,541 - +0.9
702,541 - +0.9
702,545 + +0.4
702,546 - -0.0
702,546 - +0.9
702,583 + +0.4
702,583 + +1.4
702,584 - +1.3
702,584 - +0.9
702,618 - +0.1
702,628 + +1.0
702,628 + +0.1
702,628 + -0.6
702,628 + -0.0
702,628 + -0.0
702,629 - -0.0
702,629 - -0.1
702,629 - +0.6
702,629 - +1.0
702,629 - +0.4
702,630 + -0.0
702,630 + -0.1
702,630 + +0.3
702,630 + +0.7
702,630 + +2.0
702,631 - +0.1
702,631 - +0.6
702,637 + +0.6
702,698 + -0.1
702,723 + IAI46_03265 0.11 +0.1
702,723 + IAI46_03265 0.11 -0.7
702,724 - IAI46_03265 0.11 +1.7
702,724 - IAI46_03265 0.11 +0.3
702,768 + IAI46_03265 0.17 +0.7
702,885 + IAI46_03265 0.31 -0.7
703,023 + IAI46_03265 0.48 -0.9
703,023 + IAI46_03265 0.48 -0.2
703,023 + IAI46_03265 0.48 +0.4
703,094 + IAI46_03265 0.56 -1.5
703,094 + IAI46_03265 0.56 +0.3
703,095 - IAI46_03265 0.56 +0.8
703,099 + IAI46_03265 0.57 -0.3
703,099 + IAI46_03265 0.57 +1.3
703,100 - IAI46_03265 0.57 +0.7
703,100 - IAI46_03265 0.57 +0.3
703,100 - IAI46_03265 0.57 +0.4
703,100 - IAI46_03265 0.57 -0.0
703,262 + IAI46_03265 0.77 +0.8
703,262 + IAI46_03265 0.77 -1.0
703,263 - IAI46_03265 0.77 +0.4
703,263 - IAI46_03265 0.77 +0.4
703,263 - IAI46_03265 0.77 +1.3
703,472 - +0.8
703,491 - -0.1
703,580 - IAI46_03270 0.13 +1.1
703,617 - IAI46_03270 0.18 +0.5
703,636 - IAI46_03270 0.21 +0.7
703,656 + IAI46_03270 0.24 +0.3
703,656 + IAI46_03270 0.24 +0.1
703,656 + IAI46_03270 0.24 -1.6
703,656 + IAI46_03270 0.24 -0.1
703,657 - IAI46_03270 0.24 +0.4
703,657 - IAI46_03270 0.24 -0.4
703,657 - IAI46_03270 0.24 -0.0
703,657 - IAI46_03270 0.24 +0.9
703,819 + IAI46_03270 0.49 +0.1
703,966 - IAI46_03270 0.72 +0.1
704,032 - IAI46_03270 0.82 -0.2
704,088 + +0.0
704,138 + -0.2
704,139 - +0.0
704,139 - +0.1
704,139 - -0.3
704,139 - +0.1
704,187 + -0.5
704,187 + +0.6
704,187 + +0.3
704,188 - +0.7
704,188 - -0.3
704,188 - -0.2
704,188 - -0.1
704,304 + -1.7
704,305 - -0.5
704,305 - -1.0

Or see this region's nucleotide sequence