Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03085 and IAI46_03090 are separated by 194 nucleotides IAI46_03090 and IAI46_03095 are separated by 69 nucleotides IAI46_03095 and IAI46_03100 are separated by 390 nucleotides
IAI46_03085: IAI46_03085 - Na+/H+ antiporter NhaA, at 659,909 to 661,075
_03085
IAI46_03090: IAI46_03090 - transcriptional activator NhaR, at 661,270 to 662,169
_03090
IAI46_03095: IAI46_03095 - 30S ribosomal protein S20, at 662,239 to 662,499
_03095
IAI46_03100: IAI46_03100 - bifunctional riboflavin kinase/FAD synthetase, at 662,890 to 663,828
_03100
Position (kb) 661
662
663 Strain fitness (log2 ratio) -2
-1
0
1
2 at 660.307 kb on + strand, within IAI46_03085 at 660.391 kb on + strand, within IAI46_03085 at 660.415 kb on - strand, within IAI46_03085 at 660.415 kb on - strand, within IAI46_03085 at 660.418 kb on + strand, within IAI46_03085 at 660.431 kb on + strand, within IAI46_03085 at 660.432 kb on - strand, within IAI46_03085 at 660.432 kb on - strand, within IAI46_03085 at 660.432 kb on - strand, within IAI46_03085 at 660.432 kb on - strand, within IAI46_03085 at 660.432 kb on - strand, within IAI46_03085 at 660.496 kb on + strand, within IAI46_03085 at 660.497 kb on - strand, within IAI46_03085 at 660.530 kb on + strand, within IAI46_03085 at 660.530 kb on + strand, within IAI46_03085 at 660.531 kb on - strand, within IAI46_03085 at 660.531 kb on - strand, within IAI46_03085 at 660.532 kb on + strand, within IAI46_03085 at 660.532 kb on + strand, within IAI46_03085 at 660.532 kb on + strand, within IAI46_03085 at 660.533 kb on - strand, within IAI46_03085 at 660.533 kb on - strand, within IAI46_03085 at 660.533 kb on - strand, within IAI46_03085 at 660.533 kb on - strand, within IAI46_03085 at 660.558 kb on + strand, within IAI46_03085 at 660.559 kb on - strand, within IAI46_03085 at 660.559 kb on - strand, within IAI46_03085 at 660.559 kb on - strand, within IAI46_03085 at 660.563 kb on - strand, within IAI46_03085 at 660.692 kb on - strand, within IAI46_03085 at 660.692 kb on - strand, within IAI46_03085 at 660.975 kb on + strand at 660.975 kb on + strand at 660.975 kb on + strand at 660.975 kb on + strand at 660.975 kb on + strand at 660.975 kb on + strand at 660.976 kb on - strand at 660.976 kb on - strand at 660.976 kb on - strand at 660.976 kb on - strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.978 kb on + strand at 660.979 kb on - strand at 660.979 kb on - strand at 660.979 kb on - strand at 660.986 kb on + strand at 660.987 kb on - strand at 661.019 kb on - strand at 661.037 kb on + strand at 661.082 kb on + strand at 661.083 kb on - strand at 661.111 kb on + strand at 661.111 kb on + strand at 661.111 kb on + strand at 661.111 kb on + strand at 661.111 kb on + strand at 661.111 kb on + strand at 661.112 kb on - strand at 661.112 kb on - strand at 661.112 kb on - strand at 661.112 kb on - strand at 661.112 kb on - strand at 661.112 kb on - strand at 661.116 kb on + strand at 661.116 kb on + strand at 661.116 kb on + strand at 661.116 kb on + strand at 661.117 kb on - strand at 661.117 kb on - strand at 661.139 kb on + strand at 661.139 kb on + strand at 661.140 kb on - strand at 661.140 kb on - strand at 661.144 kb on + strand at 661.145 kb on - strand at 661.214 kb on + strand at 661.255 kb on + strand at 661.293 kb on + strand at 661.303 kb on + strand at 661.303 kb on + strand at 661.303 kb on + strand at 661.304 kb on - strand at 661.304 kb on - strand at 661.306 kb on + strand at 661.306 kb on + strand at 661.306 kb on + strand at 661.307 kb on - strand at 661.307 kb on - strand at 661.501 kb on - strand, within IAI46_03090 at 661.501 kb on - strand, within IAI46_03090 at 661.501 kb on - strand, within IAI46_03090 at 661.501 kb on - strand, within IAI46_03090 at 661.565 kb on + strand, within IAI46_03090 at 661.565 kb on + strand, within IAI46_03090 at 661.566 kb on - strand, within IAI46_03090 at 661.701 kb on + strand, within IAI46_03090 at 661.701 kb on + strand, within IAI46_03090 at 661.702 kb on - strand, within IAI46_03090 at 661.702 kb on - strand, within IAI46_03090 at 661.710 kb on + strand, within IAI46_03090 at 661.711 kb on - strand, within IAI46_03090 at 661.887 kb on + strand, within IAI46_03090 at 661.897 kb on - strand, within IAI46_03090 at 661.925 kb on + strand, within IAI46_03090 at 661.978 kb on + strand, within IAI46_03090 at 662.011 kb on + strand, within IAI46_03090 at 662.011 kb on + strand, within IAI46_03090 at 662.022 kb on + strand, within IAI46_03090 at 662.022 kb on + strand, within IAI46_03090 at 662.023 kb on - strand, within IAI46_03090 at 662.023 kb on - strand, within IAI46_03090 at 662.026 kb on + strand, within IAI46_03090 at 662.026 kb on + strand, within IAI46_03090 at 662.026 kb on + strand, within IAI46_03090 at 662.027 kb on - strand, within IAI46_03090 at 662.027 kb on - strand, within IAI46_03090 at 662.027 kb on - strand, within IAI46_03090 at 662.028 kb on + strand, within IAI46_03090 at 662.029 kb on - strand, within IAI46_03090 at 662.058 kb on + strand, within IAI46_03090 at 662.058 kb on + strand, within IAI46_03090 at 662.058 kb on + strand, within IAI46_03090 at 662.058 kb on + strand, within IAI46_03090 at 662.058 kb on + strand, within IAI46_03090 at 662.058 kb on + strand, within IAI46_03090 at 662.059 kb on - strand, within IAI46_03090 at 662.059 kb on - strand, within IAI46_03090 at 662.059 kb on - strand, within IAI46_03090 at 662.059 kb on - strand, within IAI46_03090 at 662.059 kb on - strand, within IAI46_03090 at 662.064 kb on + strand, within IAI46_03090 at 662.064 kb on + strand, within IAI46_03090 at 662.064 kb on + strand, within IAI46_03090 at 662.080 kb on + strand at 662.080 kb on + strand at 662.081 kb on - strand at 662.081 kb on - strand at 662.081 kb on - strand at 662.083 kb on + strand at 662.083 kb on + strand at 662.083 kb on + strand at 662.083 kb on + strand at 662.083 kb on + strand at 662.083 kb on + strand at 662.083 kb on + strand at 662.083 kb on + strand at 662.084 kb on - strand at 662.084 kb on - strand at 662.167 kb on + strand at 662.168 kb on - strand at 662.592 kb on - strand at 662.621 kb on - strand at 662.644 kb on - strand at 662.664 kb on + strand at 662.664 kb on + strand at 662.665 kb on - strand at 662.755 kb on - strand at 662.786 kb on + strand at 662.787 kb on - strand at 662.787 kb on - strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.800 kb on + strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.801 kb on - strand at 662.806 kb on + strand at 662.806 kb on + strand at 662.806 kb on + strand at 662.806 kb on + strand at 662.807 kb on - strand at 662.807 kb on - strand at 662.807 kb on - strand at 662.807 kb on - strand at 662.807 kb on - strand at 662.809 kb on + strand at 662.809 kb on + strand at 662.809 kb on + strand at 662.809 kb on + strand at 662.809 kb on + strand at 662.810 kb on - strand at 662.810 kb on - strand at 662.814 kb on - strand at 662.814 kb on - strand at 662.848 kb on + strand at 662.848 kb on + strand at 662.849 kb on - strand at 662.855 kb on + strand at 662.855 kb on + strand at 662.857 kb on + strand at 662.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 660,307 + IAI46_03085 0.34 -0.2 660,391 + IAI46_03085 0.41 +0.6 660,415 - IAI46_03085 0.43 -0.2 660,415 - IAI46_03085 0.43 -0.6 660,418 + IAI46_03085 0.44 +1.4 660,431 + IAI46_03085 0.45 -0.6 660,432 - IAI46_03085 0.45 -1.0 660,432 - IAI46_03085 0.45 -2.7 660,432 - IAI46_03085 0.45 -0.5 660,432 - IAI46_03085 0.45 -0.6 660,432 - IAI46_03085 0.45 -0.4 660,496 + IAI46_03085 0.50 -0.6 660,497 - IAI46_03085 0.50 +0.4 660,530 + IAI46_03085 0.53 +0.4 660,530 + IAI46_03085 0.53 +0.2 660,531 - IAI46_03085 0.53 -0.1 660,531 - IAI46_03085 0.53 +0.5 660,532 + IAI46_03085 0.53 -0.1 660,532 + IAI46_03085 0.53 -0.7 660,532 + IAI46_03085 0.53 +0.3 660,533 - IAI46_03085 0.53 -0.2 660,533 - IAI46_03085 0.53 +0.5 660,533 - IAI46_03085 0.53 +0.3 660,533 - IAI46_03085 0.53 +0.4 660,558 + IAI46_03085 0.56 -0.6 660,559 - IAI46_03085 0.56 +0.2 660,559 - IAI46_03085 0.56 +0.0 660,559 - IAI46_03085 0.56 -0.5 660,563 - IAI46_03085 0.56 +0.2 660,692 - IAI46_03085 0.67 +0.2 660,692 - IAI46_03085 0.67 +1.0 660,975 + +0.2 660,975 + -1.2 660,975 + +1.1 660,975 + +0.0 660,975 + -1.6 660,975 + -0.4 660,976 - +0.4 660,976 - -0.4 660,976 - -0.7 660,976 - +0.1 660,978 + -0.3 660,978 + +0.4 660,978 + -0.3 660,978 + +0.3 660,978 + -0.2 660,978 + +1.0 660,978 + +0.1 660,978 + -0.3 660,978 + +0.8 660,978 + -0.1 660,979 - -0.8 660,979 - -1.8 660,979 - -1.7 660,986 + +0.1 660,987 - +0.4 661,019 - -1.0 661,037 + -1.0 661,082 + +0.6 661,083 - +0.3 661,111 + -0.2 661,111 + +1.0 661,111 + +0.3 661,111 + +1.0 661,111 + +0.1 661,111 + -0.3 661,112 - +0.8 661,112 - +0.0 661,112 - +0.8 661,112 - +0.5 661,112 - -0.3 661,112 - -0.2 661,116 + +0.2 661,116 + +0.7 661,116 + -0.4 661,116 + -0.1 661,117 - -0.0 661,117 - +0.1 661,139 + +1.2 661,139 + -1.4 661,140 - +0.6 661,140 - -0.0 661,144 + +1.0 661,145 - -0.0 661,214 + +0.9 661,255 + +0.4 661,293 + -0.2 661,303 + -0.3 661,303 + +0.8 661,303 + -1.0 661,304 - +0.5 661,304 - -0.2 661,306 + -0.1 661,306 + +0.6 661,306 + +0.1 661,307 - +0.8 661,307 - +1.3 661,501 - IAI46_03090 0.26 -0.0 661,501 - IAI46_03090 0.26 -0.3 661,501 - IAI46_03090 0.26 +0.5 661,501 - IAI46_03090 0.26 -0.0 661,565 + IAI46_03090 0.33 -0.5 661,565 + IAI46_03090 0.33 -0.8 661,566 - IAI46_03090 0.33 -2.0 661,701 + IAI46_03090 0.48 +0.2 661,701 + IAI46_03090 0.48 +0.7 661,702 - IAI46_03090 0.48 -0.7 661,702 - IAI46_03090 0.48 -0.5 661,710 + IAI46_03090 0.49 +0.3 661,711 - IAI46_03090 0.49 -0.6 661,887 + IAI46_03090 0.69 -0.1 661,897 - IAI46_03090 0.70 -0.4 661,925 + IAI46_03090 0.73 +0.0 661,978 + IAI46_03090 0.79 +0.1 662,011 + IAI46_03090 0.82 +1.6 662,011 + IAI46_03090 0.82 -0.3 662,022 + IAI46_03090 0.84 +0.7 662,022 + IAI46_03090 0.84 -0.1 662,023 - IAI46_03090 0.84 -0.2 662,023 - IAI46_03090 0.84 -0.1 662,026 + IAI46_03090 0.84 +1.0 662,026 + IAI46_03090 0.84 -0.2 662,026 + IAI46_03090 0.84 -0.6 662,027 - IAI46_03090 0.84 -0.2 662,027 - IAI46_03090 0.84 +1.2 662,027 - IAI46_03090 0.84 +0.3 662,028 + IAI46_03090 0.84 +0.1 662,029 - IAI46_03090 0.84 +0.8 662,058 + IAI46_03090 0.88 -0.2 662,058 + IAI46_03090 0.88 +1.1 662,058 + IAI46_03090 0.88 -0.2 662,058 + IAI46_03090 0.88 +0.3 662,058 + IAI46_03090 0.88 +1.6 662,058 + IAI46_03090 0.88 +0.1 662,059 - IAI46_03090 0.88 +0.1 662,059 - IAI46_03090 0.88 +0.3 662,059 - IAI46_03090 0.88 -0.3 662,059 - IAI46_03090 0.88 +0.8 662,059 - IAI46_03090 0.88 -0.0 662,064 + IAI46_03090 0.88 -0.5 662,064 + IAI46_03090 0.88 +0.8 662,064 + IAI46_03090 0.88 +1.0 662,080 + +0.3 662,080 + +0.5 662,081 - -0.0 662,081 - -1.7 662,081 - +0.2 662,083 + -1.7 662,083 + +0.0 662,083 + +0.1 662,083 + +1.0 662,083 + -0.2 662,083 + -0.1 662,083 + -0.8 662,083 + +0.8 662,084 - +0.5 662,084 - +0.0 662,167 + +1.8 662,168 - +1.2 662,592 - +2.2 662,621 - -1.0 662,644 - -0.2 662,664 + -0.7 662,664 + +0.7 662,665 - -0.7 662,755 - +1.0 662,786 + +0.3 662,787 - +0.3 662,787 - +0.3 662,800 + +0.2 662,800 + +0.1 662,800 + +0.2 662,800 + +0.4 662,800 + -0.3 662,800 + -0.5 662,800 + +0.3 662,800 + -0.0 662,800 + +0.1 662,801 - -1.4 662,801 - +1.2 662,801 - -0.3 662,801 - +0.3 662,801 - -0.2 662,801 - -0.7 662,801 - -0.9 662,801 - -0.2 662,801 - +0.8 662,801 - +0.2 662,801 - +1.2 662,806 + -1.1 662,806 + +0.4 662,806 + +0.5 662,806 + -0.5 662,807 - +0.6 662,807 - +0.4 662,807 - +0.2 662,807 - +1.0 662,807 - +0.1 662,809 + +0.5 662,809 + +1.2 662,809 + -0.6 662,809 + +0.3 662,809 + +0.0 662,810 - +0.4 662,810 - -0.6 662,814 - +0.7 662,814 - +0.9 662,848 + -0.9 662,848 + +0.2 662,849 - +0.6 662,855 + +0.8 662,855 + +0.1 662,857 + -1.7 662,857 + +1.3
Or see this region's nucleotide sequence