Strain Fitness in Serratia liquefaciens MT49 around IAI46_02810

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02800 and IAI46_02805 are separated by 14 nucleotidesIAI46_02805 and IAI46_02810 overlap by 23 nucleotidesIAI46_02810 and IAI46_02815 overlap by 4 nucleotidesIAI46_02815 and IAI46_02820 are separated by 27 nucleotides IAI46_02800: IAI46_02800 - L-fuconate dehydratase, at 602,585 to 603,862 _02800 IAI46_02805: IAI46_02805 - amidohydrolase family protein, at 603,877 to 604,740 _02805 IAI46_02810: IAI46_02810 - SDR family oxidoreductase, at 604,718 to 605,494 _02810 IAI46_02815: IAI46_02815 - L-rhamnose mutarotase, at 605,491 to 605,850 _02815 IAI46_02820: IAI46_02820 - L-fucose:H+ symporter permease, at 605,878 to 607,107 _02820 Position (kb) 604 605 606Strain fitness (log2 ratio) -2 -1 0 1 2at 603.785 kb on + strandat 603.785 kb on + strandat 603.785 kb on + strandat 603.785 kb on + strandat 603.785 kb on + strandat 603.786 kb on - strandat 603.788 kb on - strandat 603.845 kb on + strandat 603.904 kb on + strandat 603.904 kb on + strandat 603.904 kb on + strandat 603.905 kb on - strandat 603.914 kb on - strandat 603.914 kb on - strandat 604.285 kb on + strand, within IAI46_02805at 604.286 kb on - strand, within IAI46_02805at 604.352 kb on - strand, within IAI46_02805at 604.361 kb on + strand, within IAI46_02805at 604.362 kb on - strand, within IAI46_02805at 604.470 kb on + strand, within IAI46_02805at 604.470 kb on + strand, within IAI46_02805at 604.471 kb on - strand, within IAI46_02805at 604.604 kb on - strand, within IAI46_02805at 604.604 kb on - strand, within IAI46_02805at 604.615 kb on + strand, within IAI46_02805at 604.697 kb on - strandat 604.727 kb on + strandat 604.727 kb on + strandat 604.728 kb on - strandat 604.728 kb on - strandat 604.738 kb on + strandat 604.739 kb on - strandat 604.739 kb on - strandat 604.867 kb on - strand, within IAI46_02810at 604.909 kb on - strand, within IAI46_02810at 604.984 kb on + strand, within IAI46_02810at 605.066 kb on + strand, within IAI46_02810at 605.067 kb on - strand, within IAI46_02810at 605.067 kb on - strand, within IAI46_02810at 605.067 kb on - strand, within IAI46_02810at 605.069 kb on + strand, within IAI46_02810at 605.289 kb on - strand, within IAI46_02810at 605.306 kb on - strand, within IAI46_02810at 605.466 kb on - strandat 605.589 kb on + strand, within IAI46_02815at 605.648 kb on - strand, within IAI46_02815at 605.685 kb on + strand, within IAI46_02815at 605.685 kb on + strand, within IAI46_02815at 605.685 kb on + strand, within IAI46_02815at 605.686 kb on - strand, within IAI46_02815at 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.873 kb on + strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.874 kb on - strandat 605.949 kb on + strandat 605.950 kb on - strandat 605.973 kb on + strandat 605.974 kb on - strandat 605.989 kb on + strandat 605.989 kb on + strandat 606.005 kb on + strand, within IAI46_02820at 606.005 kb on + strand, within IAI46_02820at 606.006 kb on - strand, within IAI46_02820at 606.006 kb on - strand, within IAI46_02820at 606.006 kb on - strand, within IAI46_02820at 606.008 kb on + strand, within IAI46_02820at 606.008 kb on + strand, within IAI46_02820at 606.008 kb on + strand, within IAI46_02820at 606.040 kb on - strand, within IAI46_02820at 606.059 kb on + strand, within IAI46_02820at 606.059 kb on + strand, within IAI46_02820at 606.060 kb on - strand, within IAI46_02820at 606.060 kb on - strand, within IAI46_02820at 606.073 kb on + strand, within IAI46_02820at 606.073 kb on + strand, within IAI46_02820at 606.073 kb on + strand, within IAI46_02820at 606.074 kb on - strand, within IAI46_02820at 606.085 kb on + strand, within IAI46_02820at 606.112 kb on + strand, within IAI46_02820at 606.117 kb on + strand, within IAI46_02820at 606.118 kb on - strand, within IAI46_02820at 606.124 kb on - strand, within IAI46_02820at 606.124 kb on - strand, within IAI46_02820at 606.124 kb on - strand, within IAI46_02820at 606.133 kb on + strand, within IAI46_02820at 606.134 kb on - strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.166 kb on + strand, within IAI46_02820at 606.167 kb on - strand, within IAI46_02820at 606.286 kb on + strand, within IAI46_02820at 606.286 kb on + strand, within IAI46_02820at 606.366 kb on + strand, within IAI46_02820at 606.367 kb on - strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.451 kb on + strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820at 606.452 kb on - strand, within IAI46_02820

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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603,785 + -0.5
603,785 + +0.6
603,785 + -0.5
603,785 + -0.3
603,785 + -0.8
603,786 - -0.6
603,788 - +0.5
603,845 + -0.7
603,904 + +0.4
603,904 + -0.1
603,904 + -0.0
603,905 - -0.5
603,914 - +1.0
603,914 - -0.6
604,285 + IAI46_02805 0.47 -1.2
604,286 - IAI46_02805 0.47 +0.7
604,352 - IAI46_02805 0.55 -1.1
604,361 + IAI46_02805 0.56 +0.5
604,362 - IAI46_02805 0.56 +0.3
604,470 + IAI46_02805 0.69 -0.0
604,470 + IAI46_02805 0.69 +0.7
604,471 - IAI46_02805 0.69 +0.8
604,604 - IAI46_02805 0.84 +0.1
604,604 - IAI46_02805 0.84 +0.8
604,615 + IAI46_02805 0.85 -0.1
604,697 - -1.0
604,727 + +0.3
604,727 + -0.2
604,728 - +0.8
604,728 - +0.5
604,738 + +0.1
604,739 - +0.1
604,739 - +0.3
604,867 - IAI46_02810 0.19 +0.5
604,909 - IAI46_02810 0.25 -0.0
604,984 + IAI46_02810 0.34 +0.2
605,066 + IAI46_02810 0.45 +0.6
605,067 - IAI46_02810 0.45 -0.5
605,067 - IAI46_02810 0.45 -0.1
605,067 - IAI46_02810 0.45 +1.0
605,069 + IAI46_02810 0.45 +0.4
605,289 - IAI46_02810 0.73 -0.9
605,306 - IAI46_02810 0.76 -0.6
605,466 - -0.3
605,589 + IAI46_02815 0.27 -0.3
605,648 - IAI46_02815 0.44 -0.2
605,685 + IAI46_02815 0.54 +0.5
605,685 + IAI46_02815 0.54 +0.2
605,685 + IAI46_02815 0.54 +0.0
605,686 - IAI46_02815 0.54 -0.3
605,873 + -1.3
605,873 + +0.4
605,873 + -0.9
605,873 + -0.0
605,873 + -0.7
605,873 + +0.6
605,873 + +1.3
605,873 + +0.0
605,873 + +0.4
605,873 + +1.0
605,873 + +0.1
605,873 + -0.2
605,873 + +1.7
605,873 + -0.3
605,873 + -0.6
605,874 - +0.1
605,874 - +0.8
605,874 - -1.0
605,874 - +2.0
605,874 - +0.5
605,949 + +0.1
605,950 - +1.2
605,973 + +0.1
605,974 - -0.1
605,989 + +0.4
605,989 + +0.4
606,005 + IAI46_02820 0.10 -0.0
606,005 + IAI46_02820 0.10 -0.2
606,006 - IAI46_02820 0.10 +1.1
606,006 - IAI46_02820 0.10 -0.6
606,006 - IAI46_02820 0.10 +0.2
606,008 + IAI46_02820 0.11 +0.6
606,008 + IAI46_02820 0.11 +0.3
606,008 + IAI46_02820 0.11 +0.6
606,040 - IAI46_02820 0.13 +0.3
606,059 + IAI46_02820 0.15 -0.3
606,059 + IAI46_02820 0.15 -0.4
606,060 - IAI46_02820 0.15 -0.8
606,060 - IAI46_02820 0.15 -0.3
606,073 + IAI46_02820 0.16 -0.8
606,073 + IAI46_02820 0.16 -0.1
606,073 + IAI46_02820 0.16 -0.7
606,074 - IAI46_02820 0.16 -1.8
606,085 + IAI46_02820 0.17 +0.7
606,112 + IAI46_02820 0.19 +0.5
606,117 + IAI46_02820 0.19 -0.3
606,118 - IAI46_02820 0.20 +0.3
606,124 - IAI46_02820 0.20 +0.1
606,124 - IAI46_02820 0.20 +0.5
606,124 - IAI46_02820 0.20 -0.1
606,133 + IAI46_02820 0.21 +0.2
606,134 - IAI46_02820 0.21 -0.1
606,166 + IAI46_02820 0.23 -0.4
606,166 + IAI46_02820 0.23 +0.4
606,166 + IAI46_02820 0.23 +0.0
606,166 + IAI46_02820 0.23 -0.1
606,167 - IAI46_02820 0.23 +0.6
606,286 + IAI46_02820 0.33 +0.1
606,286 + IAI46_02820 0.33 +1.6
606,366 + IAI46_02820 0.40 +0.9
606,367 - IAI46_02820 0.40 +1.3
606,451 + IAI46_02820 0.47 +0.5
606,451 + IAI46_02820 0.47 +0.5
606,451 + IAI46_02820 0.47 +0.0
606,451 + IAI46_02820 0.47 -1.0
606,451 + IAI46_02820 0.47 +2.2
606,451 + IAI46_02820 0.47 +0.2
606,452 - IAI46_02820 0.47 -1.2
606,452 - IAI46_02820 0.47 +0.6
606,452 - IAI46_02820 0.47 +0.2
606,452 - IAI46_02820 0.47 +0.2
606,452 - IAI46_02820 0.47 +0.6
606,452 - IAI46_02820 0.47 +0.9
606,452 - IAI46_02820 0.47 +0.7
606,452 - IAI46_02820 0.47 -2.0
606,452 - IAI46_02820 0.47 -0.6
606,452 - IAI46_02820 0.47 -0.2
606,452 - IAI46_02820 0.47 +0.2

Or see this region's nucleotide sequence