Strain Fitness in Serratia liquefaciens MT49 around IAI46_02720

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02710 and IAI46_02715 are separated by 4 nucleotidesIAI46_02715 and IAI46_02720 are separated by 96 nucleotidesIAI46_02720 and IAI46_02725 are separated by 359 nucleotidesIAI46_02725 and IAI46_02730 overlap by 4 nucleotides IAI46_02710: IAI46_02710 - molybdenum cofactor biosynthesis F family protein, at 585,064 to 585,861 _02710 IAI46_02715: IAI46_02715 - SDR family oxidoreductase, at 585,866 to 586,657 _02715 IAI46_02720: IAI46_02720 - homoprotocatechuate degradation operon regulator HpaR, at 586,754 to 587,206 _02720 IAI46_02725: IAI46_02725 - fumarylacetoacetate hydrolase family protein, at 587,566 to 588,198 _02725 IAI46_02730: IAI46_02730 - fumarylacetoacetate hydrolase family protein, at 588,195 to 588,959 _02730 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1 2at 585.859 kb on + strandat 585.859 kb on + strandat 585.860 kb on - strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strandat 586.160 kb on + strand, within IAI46_02715at 586.160 kb on + strand, within IAI46_02715at 586.161 kb on - strand, within IAI46_02715at 586.200 kb on + strand, within IAI46_02715at 586.350 kb on - strand, within IAI46_02715at 586.371 kb on + strand, within IAI46_02715at 586.372 kb on - strand, within IAI46_02715at 586.382 kb on - strand, within IAI46_02715at 586.586 kb on + strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.589 kb on - strandat 586.678 kb on + strandat 586.678 kb on + strandat 586.682 kb on - strandat 586.729 kb on - strandat 586.742 kb on + strandat 586.742 kb on + strandat 586.824 kb on - strand, within IAI46_02720at 586.878 kb on + strand, within IAI46_02720at 586.878 kb on + strand, within IAI46_02720at 586.878 kb on + strand, within IAI46_02720at 586.889 kb on + strand, within IAI46_02720at 586.890 kb on - strand, within IAI46_02720at 586.890 kb on - strand, within IAI46_02720at 586.911 kb on + strand, within IAI46_02720at 586.911 kb on + strand, within IAI46_02720at 586.911 kb on + strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.944 kb on + strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.990 kb on + strand, within IAI46_02720at 586.991 kb on - strand, within IAI46_02720at 586.991 kb on - strand, within IAI46_02720at 587.206 kb on + strandat 587.206 kb on + strandat 587.206 kb on + strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.222 kb on + strandat 587.223 kb on - strandat 587.223 kb on - strandat 587.224 kb on + strandat 587.225 kb on - strandat 587.225 kb on - strandat 587.237 kb on + strandat 587.237 kb on + strandat 587.250 kb on - strandat 587.250 kb on - strandat 587.289 kb on + strandat 587.412 kb on - strandat 587.412 kb on - strandat 587.499 kb on - strandat 587.500 kb on + strandat 587.501 kb on - strandat 587.613 kb on - strandat 587.649 kb on + strand, within IAI46_02725at 587.649 kb on + strand, within IAI46_02725at 587.650 kb on - strand, within IAI46_02725at 587.818 kb on + strand, within IAI46_02725at 587.819 kb on - strand, within IAI46_02725at 587.969 kb on - strand, within IAI46_02725at 588.055 kb on - strand, within IAI46_02725at 588.055 kb on - strand, within IAI46_02725at 588.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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585,859 + -0.4
585,859 + -0.5
585,860 - -0.1
585,878 + +1.0
585,878 + -0.0
585,878 + +0.4
585,878 + -0.4
586,160 + IAI46_02715 0.37 -0.6
586,160 + IAI46_02715 0.37 +0.3
586,161 - IAI46_02715 0.37 -0.7
586,200 + IAI46_02715 0.42 -0.4
586,350 - IAI46_02715 0.61 +0.9
586,371 + IAI46_02715 0.64 -0.1
586,372 - IAI46_02715 0.64 -0.3
586,382 - IAI46_02715 0.65 +0.9
586,586 + -0.4
586,587 - +0.5
586,587 - -0.1
586,587 - -0.2
586,587 - +1.4
586,587 - +0.6
586,588 + +0.1
586,588 + +0.0
586,588 + +0.5
586,588 + -0.4
586,589 - +0.8
586,678 + -1.9
586,678 + +1.2
586,682 - +0.3
586,729 - +0.7
586,742 + -0.2
586,742 + -0.8
586,824 - IAI46_02720 0.15 -0.1
586,878 + IAI46_02720 0.27 +0.3
586,878 + IAI46_02720 0.27 +0.2
586,878 + IAI46_02720 0.27 +0.4
586,889 + IAI46_02720 0.30 +0.0
586,890 - IAI46_02720 0.30 -0.4
586,890 - IAI46_02720 0.30 -0.1
586,911 + IAI46_02720 0.35 +0.1
586,911 + IAI46_02720 0.35 +0.2
586,911 + IAI46_02720 0.35 -0.5
586,912 - IAI46_02720 0.35 +0.8
586,912 - IAI46_02720 0.35 -0.9
586,912 - IAI46_02720 0.35 +0.1
586,912 - IAI46_02720 0.35 +0.8
586,944 + IAI46_02720 0.42 -0.3
586,945 - IAI46_02720 0.42 +0.0
586,945 - IAI46_02720 0.42 +0.2
586,945 - IAI46_02720 0.42 -1.5
586,945 - IAI46_02720 0.42 +0.5
586,945 - IAI46_02720 0.42 +0.4
586,990 + IAI46_02720 0.52 -0.1
586,991 - IAI46_02720 0.52 +0.7
586,991 - IAI46_02720 0.52 +0.1
587,206 + -0.4
587,206 + -1.0
587,206 + -0.3
587,207 - -0.1
587,207 - +0.0
587,207 - +0.5
587,207 - +0.3
587,222 + -0.4
587,223 - +0.4
587,223 - -0.4
587,224 + -0.2
587,225 - +0.3
587,225 - +1.9
587,237 + +0.9
587,237 + -0.6
587,250 - +0.1
587,250 - -0.9
587,289 + +0.6
587,412 - +0.7
587,412 - +0.4
587,499 - +0.5
587,500 + +0.1
587,501 - +0.4
587,613 - +0.5
587,649 + IAI46_02725 0.13 +0.8
587,649 + IAI46_02725 0.13 -1.5
587,650 - IAI46_02725 0.13 -0.6
587,818 + IAI46_02725 0.40 -0.7
587,819 - IAI46_02725 0.40 +0.6
587,969 - IAI46_02725 0.64 -0.1
588,055 - IAI46_02725 0.77 +0.6
588,055 - IAI46_02725 0.77 +0.5
588,173 + +0.1

Or see this region's nucleotide sequence