Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02510 and IAI46_02515 are separated by 413 nucleotides IAI46_02515 and IAI46_02520 are separated by 24 nucleotides IAI46_02520 and IAI46_02525 overlap by 4 nucleotides
IAI46_02510: IAI46_02510 - NAD(P)-binding domain-containing protein, at 541,123 to 542,391
_02510
IAI46_02515: IAI46_02515 - cytosine permease, at 542,805 to 544,199
_02515
IAI46_02520: IAI46_02520 - RidA family protein, at 544,224 to 544,664
_02520
IAI46_02525: IAI46_02525 - DUF1028 domain-containing protein, at 544,661 to 545,335
_02525
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.809 kb on - strand, within IAI46_02510 at 541.809 kb on - strand, within IAI46_02510 at 541.831 kb on + strand, within IAI46_02510 at 541.831 kb on + strand, within IAI46_02510 at 541.908 kb on + strand, within IAI46_02510 at 541.913 kb on + strand, within IAI46_02510 at 541.913 kb on + strand, within IAI46_02510 at 542.081 kb on - strand, within IAI46_02510 at 542.081 kb on - strand, within IAI46_02510 at 542.081 kb on - strand, within IAI46_02510 at 542.081 kb on - strand, within IAI46_02510 at 542.123 kb on + strand, within IAI46_02510 at 542.124 kb on - strand, within IAI46_02510 at 542.178 kb on + strand, within IAI46_02510 at 542.233 kb on + strand, within IAI46_02510 at 542.234 kb on - strand, within IAI46_02510 at 542.409 kb on - strand at 542.432 kb on - strand at 542.432 kb on - strand at 542.433 kb on + strand at 542.434 kb on - strand at 542.467 kb on - strand at 542.492 kb on + strand at 542.577 kb on - strand at 542.611 kb on + strand at 542.611 kb on + strand at 542.785 kb on + strand at 542.789 kb on + strand at 542.856 kb on + strand at 542.856 kb on + strand at 542.857 kb on - strand at 542.857 kb on - strand at 542.857 kb on - strand at 542.859 kb on - strand at 543.000 kb on - strand, within IAI46_02515 at 543.147 kb on + strand, within IAI46_02515 at 543.147 kb on + strand, within IAI46_02515 at 543.147 kb on + strand, within IAI46_02515 at 543.148 kb on - strand, within IAI46_02515 at 543.148 kb on - strand, within IAI46_02515 at 543.148 kb on - strand, within IAI46_02515 at 543.148 kb on - strand, within IAI46_02515 at 543.185 kb on + strand, within IAI46_02515 at 543.232 kb on + strand, within IAI46_02515 at 543.285 kb on - strand, within IAI46_02515 at 543.296 kb on + strand, within IAI46_02515 at 543.297 kb on - strand, within IAI46_02515 at 543.350 kb on + strand, within IAI46_02515 at 543.350 kb on + strand, within IAI46_02515 at 543.350 kb on + strand, within IAI46_02515 at 543.350 kb on + strand, within IAI46_02515 at 543.351 kb on - strand, within IAI46_02515 at 543.351 kb on - strand, within IAI46_02515 at 543.356 kb on + strand, within IAI46_02515 at 543.364 kb on + strand, within IAI46_02515 at 543.364 kb on + strand, within IAI46_02515 at 543.364 kb on + strand, within IAI46_02515 at 543.364 kb on + strand, within IAI46_02515 at 543.364 kb on + strand, within IAI46_02515 at 543.364 kb on + strand, within IAI46_02515 at 543.364 kb on + strand, within IAI46_02515 at 543.365 kb on - strand, within IAI46_02515 at 543.463 kb on - strand, within IAI46_02515 at 543.484 kb on - strand, within IAI46_02515 at 543.484 kb on - strand, within IAI46_02515 at 543.528 kb on + strand, within IAI46_02515 at 543.528 kb on + strand, within IAI46_02515 at 543.529 kb on - strand, within IAI46_02515 at 543.583 kb on + strand, within IAI46_02515 at 543.584 kb on - strand, within IAI46_02515 at 543.584 kb on - strand, within IAI46_02515 at 543.698 kb on + strand, within IAI46_02515 at 543.699 kb on - strand, within IAI46_02515 at 543.705 kb on + strand, within IAI46_02515 at 543.706 kb on - strand, within IAI46_02515 at 543.761 kb on - strand, within IAI46_02515 at 543.765 kb on - strand, within IAI46_02515 at 543.765 kb on - strand, within IAI46_02515 at 543.765 kb on - strand, within IAI46_02515 at 543.765 kb on - strand, within IAI46_02515 at 543.799 kb on + strand, within IAI46_02515 at 543.800 kb on - strand, within IAI46_02515 at 543.824 kb on + strand, within IAI46_02515 at 543.825 kb on - strand, within IAI46_02515 at 543.825 kb on - strand, within IAI46_02515 at 543.828 kb on + strand, within IAI46_02515 at 543.829 kb on - strand, within IAI46_02515 at 543.829 kb on - strand, within IAI46_02515 at 543.829 kb on - strand, within IAI46_02515 at 543.829 kb on - strand, within IAI46_02515 at 543.829 kb on - strand, within IAI46_02515 at 543.830 kb on + strand, within IAI46_02515 at 543.831 kb on - strand, within IAI46_02515 at 543.936 kb on - strand, within IAI46_02515 at 543.936 kb on - strand, within IAI46_02515 at 543.945 kb on + strand, within IAI46_02515 at 543.945 kb on + strand, within IAI46_02515 at 543.946 kb on - strand, within IAI46_02515 at 543.953 kb on + strand, within IAI46_02515 at 543.953 kb on + strand, within IAI46_02515 at 543.953 kb on + strand, within IAI46_02515 at 543.954 kb on - strand, within IAI46_02515 at 543.954 kb on - strand, within IAI46_02515 at 543.954 kb on - strand, within IAI46_02515 at 543.954 kb on - strand, within IAI46_02515 at 543.981 kb on - strand, within IAI46_02515 at 543.981 kb on - strand, within IAI46_02515 at 543.984 kb on + strand, within IAI46_02515 at 543.984 kb on + strand, within IAI46_02515 at 543.985 kb on - strand, within IAI46_02515 at 543.985 kb on - strand, within IAI46_02515 at 543.985 kb on - strand, within IAI46_02515 at 543.985 kb on - strand, within IAI46_02515 at 543.990 kb on + strand, within IAI46_02515 at 543.991 kb on - strand, within IAI46_02515 at 543.996 kb on - strand, within IAI46_02515 at 543.996 kb on - strand, within IAI46_02515 at 544.017 kb on + strand, within IAI46_02515 at 544.018 kb on - strand, within IAI46_02515 at 544.018 kb on - strand, within IAI46_02515 at 544.024 kb on + strand, within IAI46_02515 at 544.025 kb on - strand, within IAI46_02515 at 544.025 kb on - strand, within IAI46_02515 at 544.028 kb on + strand, within IAI46_02515 at 544.028 kb on + strand, within IAI46_02515 at 544.055 kb on + strand, within IAI46_02515 at 544.063 kb on + strand at 544.063 kb on + strand at 544.063 kb on + strand at 544.064 kb on - strand at 544.064 kb on - strand at 544.066 kb on - strand at 544.066 kb on - strand at 544.066 kb on - strand at 544.088 kb on + strand at 544.143 kb on + strand at 544.143 kb on + strand at 544.143 kb on + strand at 544.146 kb on + strand at 544.197 kb on + strand at 544.197 kb on + strand at 544.198 kb on - strand at 544.210 kb on - strand at 544.230 kb on - strand at 544.234 kb on + strand at 544.234 kb on + strand at 544.235 kb on - strand at 544.235 kb on - strand at 544.259 kb on + strand at 544.262 kb on + strand at 544.263 kb on - strand at 544.265 kb on + strand at 544.266 kb on - strand at 544.281 kb on - strand, within IAI46_02520 at 544.281 kb on - strand, within IAI46_02520 at 544.335 kb on + strand, within IAI46_02520 at 544.335 kb on + strand, within IAI46_02520 at 544.336 kb on - strand, within IAI46_02520 at 544.336 kb on - strand, within IAI46_02520 at 544.466 kb on + strand, within IAI46_02520 at 544.466 kb on + strand, within IAI46_02520 at 544.466 kb on + strand, within IAI46_02520 at 544.466 kb on + strand, within IAI46_02520 at 544.467 kb on - strand, within IAI46_02520 at 544.472 kb on + strand, within IAI46_02520 at 544.473 kb on - strand, within IAI46_02520 at 544.485 kb on + strand, within IAI46_02520 at 544.485 kb on + strand, within IAI46_02520 at 544.485 kb on + strand, within IAI46_02520 at 544.486 kb on - strand, within IAI46_02520 at 544.486 kb on - strand, within IAI46_02520 at 544.486 kb on - strand, within IAI46_02520 at 544.486 kb on - strand, within IAI46_02520 at 544.491 kb on - strand, within IAI46_02520 at 544.503 kb on + strand, within IAI46_02520 at 544.533 kb on - strand, within IAI46_02520 at 544.541 kb on + strand, within IAI46_02520 at 544.542 kb on - strand, within IAI46_02520 at 544.542 kb on - strand, within IAI46_02520 at 544.542 kb on - strand, within IAI46_02520 at 544.556 kb on + strand, within IAI46_02520 at 544.616 kb on + strand, within IAI46_02520 at 544.619 kb on + strand, within IAI46_02520 at 544.619 kb on + strand, within IAI46_02520 at 544.620 kb on - strand, within IAI46_02520 at 544.620 kb on - strand, within IAI46_02520 at 544.660 kb on + strand at 544.660 kb on + strand at 544.660 kb on + strand at 544.661 kb on - strand at 544.661 kb on - strand at 544.872 kb on + strand, within IAI46_02525 at 544.873 kb on - strand, within IAI46_02525 at 544.873 kb on - strand, within IAI46_02525 at 544.892 kb on - strand, within IAI46_02525 at 544.911 kb on + strand, within IAI46_02525 at 544.912 kb on - strand, within IAI46_02525 at 544.912 kb on - strand, within IAI46_02525 at 544.917 kb on + strand, within IAI46_02525 at 544.918 kb on - strand, within IAI46_02525 at 544.918 kb on - strand, within IAI46_02525 at 544.918 kb on - strand, within IAI46_02525 at 544.918 kb on - strand, within IAI46_02525 at 544.946 kb on - strand, within IAI46_02525 at 544.970 kb on + strand, within IAI46_02525 at 544.970 kb on + strand, within IAI46_02525 at 544.970 kb on + strand, within IAI46_02525 at 544.970 kb on + strand, within IAI46_02525 at 544.970 kb on + strand, within IAI46_02525 at 544.971 kb on - strand, within IAI46_02525 at 544.971 kb on - strand, within IAI46_02525 at 544.971 kb on - strand, within IAI46_02525 at 544.971 kb on - strand, within IAI46_02525 at 544.971 kb on - strand, within IAI46_02525 at 545.156 kb on - strand, within IAI46_02525 at 545.171 kb on + strand, within IAI46_02525 at 545.172 kb on - strand, within IAI46_02525 at 545.193 kb on + strand, within IAI46_02525
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 541,809 - IAI46_02510 0.54 +0.0 541,809 - IAI46_02510 0.54 +0.0 541,831 + IAI46_02510 0.56 -0.3 541,831 + IAI46_02510 0.56 -0.2 541,908 + IAI46_02510 0.62 +0.1 541,913 + IAI46_02510 0.62 +0.3 541,913 + IAI46_02510 0.62 -0.6 542,081 - IAI46_02510 0.75 -0.1 542,081 - IAI46_02510 0.75 +0.3 542,081 - IAI46_02510 0.75 +0.6 542,081 - IAI46_02510 0.75 +1.1 542,123 + IAI46_02510 0.79 -0.4 542,124 - IAI46_02510 0.79 +0.7 542,178 + IAI46_02510 0.83 -0.1 542,233 + IAI46_02510 0.87 -0.6 542,234 - IAI46_02510 0.88 +0.0 542,409 - -0.2 542,432 - -0.7 542,432 - +0.5 542,433 + -0.1 542,434 - +0.7 542,467 - -2.1 542,492 + -0.1 542,577 - -0.0 542,611 + +0.0 542,611 + +0.3 542,785 + +0.7 542,789 + +0.4 542,856 + +0.3 542,856 + +0.2 542,857 - +0.4 542,857 - +0.9 542,857 - +0.9 542,859 - -0.2 543,000 - IAI46_02515 0.14 +0.4 543,147 + IAI46_02515 0.25 +0.1 543,147 + IAI46_02515 0.25 +0.0 543,147 + IAI46_02515 0.25 -0.5 543,148 - IAI46_02515 0.25 +0.8 543,148 - IAI46_02515 0.25 -0.5 543,148 - IAI46_02515 0.25 +0.4 543,148 - IAI46_02515 0.25 -0.3 543,185 + IAI46_02515 0.27 +1.3 543,232 + IAI46_02515 0.31 -0.1 543,285 - IAI46_02515 0.34 -0.1 543,296 + IAI46_02515 0.35 -0.4 543,297 - IAI46_02515 0.35 +1.6 543,350 + IAI46_02515 0.39 +1.1 543,350 + IAI46_02515 0.39 +0.4 543,350 + IAI46_02515 0.39 -0.2 543,350 + IAI46_02515 0.39 +2.3 543,351 - IAI46_02515 0.39 -0.0 543,351 - IAI46_02515 0.39 -0.2 543,356 + IAI46_02515 0.39 -0.6 543,364 + IAI46_02515 0.40 +0.2 543,364 + IAI46_02515 0.40 +0.6 543,364 + IAI46_02515 0.40 +0.5 543,364 + IAI46_02515 0.40 +0.9 543,364 + IAI46_02515 0.40 +0.6 543,364 + IAI46_02515 0.40 +0.7 543,364 + IAI46_02515 0.40 -0.5 543,365 - IAI46_02515 0.40 -0.1 543,463 - IAI46_02515 0.47 -0.8 543,484 - IAI46_02515 0.49 +0.6 543,484 - IAI46_02515 0.49 -0.1 543,528 + IAI46_02515 0.52 +0.3 543,528 + IAI46_02515 0.52 -0.3 543,529 - IAI46_02515 0.52 -0.7 543,583 + IAI46_02515 0.56 -0.1 543,584 - IAI46_02515 0.56 +1.1 543,584 - IAI46_02515 0.56 -0.2 543,698 + IAI46_02515 0.64 +0.3 543,699 - IAI46_02515 0.64 +1.3 543,705 + IAI46_02515 0.65 -0.0 543,706 - IAI46_02515 0.65 +0.1 543,761 - IAI46_02515 0.69 +0.0 543,765 - IAI46_02515 0.69 +0.5 543,765 - IAI46_02515 0.69 +0.4 543,765 - IAI46_02515 0.69 -0.5 543,765 - IAI46_02515 0.69 +0.2 543,799 + IAI46_02515 0.71 -0.0 543,800 - IAI46_02515 0.71 +0.3 543,824 + IAI46_02515 0.73 +0.7 543,825 - IAI46_02515 0.73 +0.4 543,825 - IAI46_02515 0.73 +0.5 543,828 + IAI46_02515 0.73 -0.8 543,829 - IAI46_02515 0.73 -0.7 543,829 - IAI46_02515 0.73 -1.1 543,829 - IAI46_02515 0.73 -1.3 543,829 - IAI46_02515 0.73 -0.2 543,829 - IAI46_02515 0.73 +0.5 543,830 + IAI46_02515 0.73 -0.5 543,831 - IAI46_02515 0.74 +1.1 543,936 - IAI46_02515 0.81 -0.3 543,936 - IAI46_02515 0.81 +0.2 543,945 + IAI46_02515 0.82 +0.0 543,945 + IAI46_02515 0.82 -0.0 543,946 - IAI46_02515 0.82 -0.2 543,953 + IAI46_02515 0.82 -0.1 543,953 + IAI46_02515 0.82 +0.6 543,953 + IAI46_02515 0.82 +0.1 543,954 - IAI46_02515 0.82 +0.9 543,954 - IAI46_02515 0.82 +0.3 543,954 - IAI46_02515 0.82 +0.3 543,954 - IAI46_02515 0.82 +0.3 543,981 - IAI46_02515 0.84 -0.3 543,981 - IAI46_02515 0.84 +0.7 543,984 + IAI46_02515 0.85 -0.7 543,984 + IAI46_02515 0.85 +0.3 543,985 - IAI46_02515 0.85 +1.2 543,985 - IAI46_02515 0.85 +1.5 543,985 - IAI46_02515 0.85 +0.6 543,985 - IAI46_02515 0.85 -0.2 543,990 + IAI46_02515 0.85 +0.6 543,991 - IAI46_02515 0.85 -0.2 543,996 - IAI46_02515 0.85 +0.5 543,996 - IAI46_02515 0.85 -0.3 544,017 + IAI46_02515 0.87 -1.4 544,018 - IAI46_02515 0.87 +1.4 544,018 - IAI46_02515 0.87 -1.6 544,024 + IAI46_02515 0.87 +1.0 544,025 - IAI46_02515 0.87 -1.9 544,025 - IAI46_02515 0.87 +0.5 544,028 + IAI46_02515 0.88 +0.8 544,028 + IAI46_02515 0.88 +1.3 544,055 + IAI46_02515 0.90 +0.1 544,063 + -0.3 544,063 + +0.3 544,063 + -0.7 544,064 - +0.4 544,064 - +1.0 544,066 - -0.4 544,066 - +1.0 544,066 - -1.3 544,088 + +0.2 544,143 + -0.8 544,143 + +0.1 544,143 + -0.2 544,146 + +0.2 544,197 + +0.3 544,197 + -0.1 544,198 - -0.5 544,210 - +0.6 544,230 - -0.0 544,234 + +0.6 544,234 + +1.0 544,235 - -0.5 544,235 - -0.0 544,259 + -2.0 544,262 + +0.2 544,263 - -0.4 544,265 + -0.2 544,266 - -0.0 544,281 - IAI46_02520 0.13 -0.6 544,281 - IAI46_02520 0.13 +0.5 544,335 + IAI46_02520 0.25 -0.4 544,335 + IAI46_02520 0.25 -0.3 544,336 - IAI46_02520 0.25 +0.6 544,336 - IAI46_02520 0.25 +0.7 544,466 + IAI46_02520 0.55 -0.4 544,466 + IAI46_02520 0.55 +0.3 544,466 + IAI46_02520 0.55 -0.3 544,466 + IAI46_02520 0.55 +0.7 544,467 - IAI46_02520 0.55 +0.0 544,472 + IAI46_02520 0.56 +0.2 544,473 - IAI46_02520 0.56 +1.0 544,485 + IAI46_02520 0.59 +1.6 544,485 + IAI46_02520 0.59 -0.3 544,485 + IAI46_02520 0.59 -0.7 544,486 - IAI46_02520 0.59 +0.7 544,486 - IAI46_02520 0.59 -0.3 544,486 - IAI46_02520 0.59 -0.9 544,486 - IAI46_02520 0.59 -0.1 544,491 - IAI46_02520 0.61 +0.6 544,503 + IAI46_02520 0.63 +0.7 544,533 - IAI46_02520 0.70 +0.7 544,541 + IAI46_02520 0.72 +0.4 544,542 - IAI46_02520 0.72 +0.5 544,542 - IAI46_02520 0.72 +0.7 544,542 - IAI46_02520 0.72 +0.1 544,556 + IAI46_02520 0.75 -0.9 544,616 + IAI46_02520 0.89 +0.3 544,619 + IAI46_02520 0.90 +0.9 544,619 + IAI46_02520 0.90 +0.5 544,620 - IAI46_02520 0.90 -0.6 544,620 - IAI46_02520 0.90 +0.4 544,660 + +0.3 544,660 + +1.3 544,660 + +0.8 544,661 - -0.1 544,661 - -0.5 544,872 + IAI46_02525 0.31 -0.1 544,873 - IAI46_02525 0.31 +0.1 544,873 - IAI46_02525 0.31 +1.5 544,892 - IAI46_02525 0.34 -0.6 544,911 + IAI46_02525 0.37 +0.5 544,912 - IAI46_02525 0.37 -0.3 544,912 - IAI46_02525 0.37 -0.5 544,917 + IAI46_02525 0.38 -0.4 544,918 - IAI46_02525 0.38 -0.4 544,918 - IAI46_02525 0.38 -0.2 544,918 - IAI46_02525 0.38 +0.1 544,918 - IAI46_02525 0.38 +0.4 544,946 - IAI46_02525 0.42 +0.2 544,970 + IAI46_02525 0.46 +1.0 544,970 + IAI46_02525 0.46 -0.5 544,970 + IAI46_02525 0.46 +0.2 544,970 + IAI46_02525 0.46 +0.4 544,970 + IAI46_02525 0.46 +0.8 544,971 - IAI46_02525 0.46 +0.2 544,971 - IAI46_02525 0.46 +0.9 544,971 - IAI46_02525 0.46 +0.1 544,971 - IAI46_02525 0.46 +0.2 544,971 - IAI46_02525 0.46 -1.4 545,156 - IAI46_02525 0.73 +0.3 545,171 + IAI46_02525 0.76 +0.2 545,172 - IAI46_02525 0.76 -0.9 545,193 + IAI46_02525 0.79 -0.2
Or see this region's nucleotide sequence