Strain Fitness in Serratia liquefaciens MT49 around IAI46_02320

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02315 and IAI46_02320 are separated by 202 nucleotidesIAI46_02320 and IAI46_02325 are separated by 163 nucleotidesIAI46_02325 and IAI46_02330 are separated by 99 nucleotides IAI46_02315: IAI46_02315 - ABC transporter substrate-binding protein, at 488,658 to 490,226 _02315 IAI46_02320: IAI46_02320 - ornithine carbamoyltransferase, at 490,429 to 491,448 _02320 IAI46_02325: IAI46_02325 - ribonuclease E inhibitor RraB, at 491,612 to 492,040 _02325 IAI46_02330: IAI46_02330 - tRNA-(ms[2]io[6]A)-hydroxylase, at 492,140 to 492,904 _02330 Position (kb) 490 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 489.524 kb on + strand, within IAI46_02315at 489.525 kb on - strand, within IAI46_02315at 489.604 kb on + strand, within IAI46_02315at 489.734 kb on + strand, within IAI46_02315at 489.735 kb on - strand, within IAI46_02315at 489.851 kb on + strand, within IAI46_02315at 490.122 kb on - strandat 490.152 kb on - strandat 490.152 kb on - strandat 490.152 kb on - strandat 490.200 kb on + strandat 490.246 kb on + strandat 490.309 kb on - strandat 490.352 kb on + strandat 490.358 kb on + strandat 490.358 kb on + strandat 490.358 kb on + strandat 490.359 kb on - strandat 490.363 kb on + strandat 490.364 kb on - strandat 490.364 kb on - strandat 490.365 kb on + strandat 490.368 kb on + strandat 490.368 kb on + strandat 490.368 kb on + strandat 490.368 kb on + strandat 490.369 kb on - strandat 490.369 kb on - strandat 490.563 kb on - strand, within IAI46_02320at 490.668 kb on + strand, within IAI46_02320at 490.679 kb on + strand, within IAI46_02320at 490.699 kb on - strand, within IAI46_02320at 490.749 kb on + strand, within IAI46_02320at 490.752 kb on - strand, within IAI46_02320at 490.969 kb on - strand, within IAI46_02320at 490.994 kb on - strand, within IAI46_02320at 491.005 kb on + strand, within IAI46_02320at 491.071 kb on + strand, within IAI46_02320at 491.138 kb on + strand, within IAI46_02320at 491.138 kb on + strand, within IAI46_02320at 491.138 kb on + strand, within IAI46_02320at 491.138 kb on + strand, within IAI46_02320at 491.139 kb on - strand, within IAI46_02320at 491.139 kb on - strand, within IAI46_02320at 491.213 kb on + strand, within IAI46_02320at 491.213 kb on + strand, within IAI46_02320at 491.213 kb on + strand, within IAI46_02320at 491.350 kb on + strandat 491.411 kb on - strandat 491.427 kb on - strandat 491.437 kb on + strandat 491.438 kb on - strandat 491.438 kb on - strandat 491.443 kb on - strandat 491.443 kb on - strandat 491.494 kb on - strandat 491.497 kb on + strandat 491.497 kb on + strandat 491.497 kb on + strandat 491.497 kb on + strandat 491.498 kb on - strandat 491.574 kb on + strandat 491.605 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.607 kb on + strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.608 kb on - strandat 491.705 kb on + strand, within IAI46_02325at 491.705 kb on + strand, within IAI46_02325at 491.705 kb on + strand, within IAI46_02325at 491.705 kb on + strand, within IAI46_02325at 491.705 kb on + strand, within IAI46_02325at 491.705 kb on + strand, within IAI46_02325at 491.706 kb on - strand, within IAI46_02325at 491.706 kb on - strand, within IAI46_02325at 491.706 kb on - strand, within IAI46_02325at 491.710 kb on + strand, within IAI46_02325at 491.893 kb on - strand, within IAI46_02325at 491.933 kb on + strand, within IAI46_02325at 491.934 kb on - strand, within IAI46_02325at 491.951 kb on + strand, within IAI46_02325at 491.951 kb on + strand, within IAI46_02325at 491.951 kb on + strand, within IAI46_02325at 492.028 kb on + strandat 492.042 kb on + strandat 492.103 kb on + strandat 492.110 kb on - strandat 492.124 kb on - strandat 492.146 kb on + strandat 492.146 kb on + strandat 492.147 kb on - strandat 492.147 kb on - strandat 492.235 kb on - strand, within IAI46_02330at 492.256 kb on + strand, within IAI46_02330at 492.256 kb on + strand, within IAI46_02330at 492.257 kb on - strand, within IAI46_02330at 492.309 kb on - strand, within IAI46_02330at 492.352 kb on - strand, within IAI46_02330at 492.352 kb on - strand, within IAI46_02330at 492.352 kb on - strand, within IAI46_02330at 492.359 kb on + strand, within IAI46_02330at 492.439 kb on + strand, within IAI46_02330at 492.439 kb on + strand, within IAI46_02330at 492.440 kb on - strand, within IAI46_02330

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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489,524 + IAI46_02315 0.55 +1.1
489,525 - IAI46_02315 0.55 +0.8
489,604 + IAI46_02315 0.60 -0.0
489,734 + IAI46_02315 0.69 +0.1
489,735 - IAI46_02315 0.69 +0.4
489,851 + IAI46_02315 0.76 +0.4
490,122 - -0.1
490,152 - -0.2
490,152 - +0.6
490,152 - +0.1
490,200 + +0.5
490,246 + -0.2
490,309 - -0.1
490,352 + +0.7
490,358 + +0.4
490,358 + +0.5
490,358 + +1.0
490,359 - -0.2
490,363 + -0.1
490,364 - -0.3
490,364 - +0.9
490,365 + +0.7
490,368 + -0.1
490,368 + -0.3
490,368 + -0.0
490,368 + +0.2
490,369 - +0.8
490,369 - +0.2
490,563 - IAI46_02320 0.13 -1.2
490,668 + IAI46_02320 0.23 +0.7
490,679 + IAI46_02320 0.25 -1.7
490,699 - IAI46_02320 0.26 -0.6
490,749 + IAI46_02320 0.31 -1.8
490,752 - IAI46_02320 0.32 -0.7
490,969 - IAI46_02320 0.53 -1.4
490,994 - IAI46_02320 0.55 -2.3
491,005 + IAI46_02320 0.56 -3.3
491,071 + IAI46_02320 0.63 -1.5
491,138 + IAI46_02320 0.70 -2.2
491,138 + IAI46_02320 0.70 -0.7
491,138 + IAI46_02320 0.70 -0.7
491,138 + IAI46_02320 0.70 -0.4
491,139 - IAI46_02320 0.70 -0.9
491,139 - IAI46_02320 0.70 -1.1
491,213 + IAI46_02320 0.77 -0.9
491,213 + IAI46_02320 0.77 -1.7
491,213 + IAI46_02320 0.77 -3.4
491,350 + -2.0
491,411 - -1.0
491,427 - -0.7
491,437 + -1.5
491,438 - -0.4
491,438 - -0.6
491,443 - +0.7
491,443 - -0.5
491,494 - -0.2
491,497 + +0.2
491,497 + -0.1
491,497 + +0.1
491,497 + -0.2
491,498 - +0.0
491,574 + +1.1
491,605 + +0.3
491,607 + +0.7
491,607 + +0.3
491,607 + +0.3
491,607 + +0.1
491,607 + +0.2
491,607 + +0.6
491,607 + -0.4
491,607 + +0.6
491,607 + +0.6
491,607 + -0.5
491,607 + +0.7
491,607 + -0.8
491,607 + -0.5
491,608 - +0.6
491,608 - +0.4
491,608 - +1.6
491,608 - -0.9
491,608 - -0.2
491,608 - +0.2
491,608 - -0.7
491,608 - +0.4
491,608 - -0.5
491,705 + IAI46_02325 0.22 +1.2
491,705 + IAI46_02325 0.22 +0.1
491,705 + IAI46_02325 0.22 -1.1
491,705 + IAI46_02325 0.22 +2.8
491,705 + IAI46_02325 0.22 -1.4
491,705 + IAI46_02325 0.22 +0.0
491,706 - IAI46_02325 0.22 +0.5
491,706 - IAI46_02325 0.22 +0.4
491,706 - IAI46_02325 0.22 +0.6
491,710 + IAI46_02325 0.23 +0.4
491,893 - IAI46_02325 0.66 -1.1
491,933 + IAI46_02325 0.75 -0.7
491,934 - IAI46_02325 0.75 +1.0
491,951 + IAI46_02325 0.79 -0.1
491,951 + IAI46_02325 0.79 +0.7
491,951 + IAI46_02325 0.79 +0.3
492,028 + +1.2
492,042 + +0.2
492,103 + +0.3
492,110 - -0.4
492,124 - -0.2
492,146 + +1.2
492,146 + -0.4
492,147 - +0.9
492,147 - -0.9
492,235 - IAI46_02330 0.12 +1.3
492,256 + IAI46_02330 0.15 +0.2
492,256 + IAI46_02330 0.15 -0.6
492,257 - IAI46_02330 0.15 -0.8
492,309 - IAI46_02330 0.22 -0.2
492,352 - IAI46_02330 0.28 +0.1
492,352 - IAI46_02330 0.28 -0.7
492,352 - IAI46_02330 0.28 +0.1
492,359 + IAI46_02330 0.29 +0.2
492,439 + IAI46_02330 0.39 -1.3
492,439 + IAI46_02330 0.39 -0.5
492,440 - IAI46_02330 0.39 +0.0

Or see this region's nucleotide sequence