Strain Fitness in Serratia liquefaciens MT49 around IAI46_01965

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01960 and IAI46_01965 are separated by 116 nucleotidesIAI46_01965 and IAI46_01970 overlap by 11 nucleotides IAI46_01960: IAI46_01960 - lipoprotein NlpI, at 420,842 to 421,726 _01960 IAI46_01965: IAI46_01965 - protein YrbN, at 421,843 to 421,923 _01965 IAI46_01970: IAI46_01970 - DEAD/DEAH family ATP-dependent RNA helicase, at 421,913 to 423,880 _01970 Position (kb) 421 422Strain fitness (log2 ratio) -2 -1 0 1 2at 420.866 kb on + strandat 420.866 kb on + strandat 420.866 kb on + strandat 420.867 kb on - strandat 420.990 kb on + strand, within IAI46_01960at 420.991 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.037 kb on + strand, within IAI46_01960at 421.055 kb on + strand, within IAI46_01960at 421.056 kb on - strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.187 kb on + strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.227 kb on - strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.263 kb on - strand, within IAI46_01960at 421.265 kb on + strand, within IAI46_01960at 421.310 kb on + strand, within IAI46_01960at 421.311 kb on - strand, within IAI46_01960at 421.352 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.457 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.560 kb on + strand, within IAI46_01960at 421.561 kb on - strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.565 kb on - strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.639 kb on + strandat 421.639 kb on + strandat 421.658 kb on + strandat 421.683 kb on + strandat 421.724 kb on + strandat 421.725 kb on - strandat 421.740 kb on - strandat 421.752 kb on + strandat 421.753 kb on - strandat 421.810 kb on + strandat 421.878 kb on + strand, within IAI46_01965at 421.878 kb on + strand, within IAI46_01965at 421.878 kb on + strand, within IAI46_01965at 421.893 kb on + strand, within IAI46_01965

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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420,866 + +0.2
420,866 + -1.1
420,866 + -0.3
420,867 - +1.0
420,990 + IAI46_01960 0.17 -1.2
420,991 - IAI46_01960 0.17 +0.1
421,036 - IAI46_01960 0.22 -0.8
421,036 - IAI46_01960 0.22 -2.2
421,037 + IAI46_01960 0.22 +0.6
421,055 + IAI46_01960 0.24 -0.3
421,056 - IAI46_01960 0.24 +0.4
421,123 + IAI46_01960 0.32 -1.6
421,123 + IAI46_01960 0.32 +0.4
421,123 + IAI46_01960 0.32 -1.0
421,142 + IAI46_01960 0.34 -1.8
421,142 + IAI46_01960 0.34 +0.2
421,154 + IAI46_01960 0.35 +1.3
421,154 + IAI46_01960 0.35 -1.4
421,154 + IAI46_01960 0.35 +0.2
421,154 + IAI46_01960 0.35 +1.4
421,155 - IAI46_01960 0.35 -1.6
421,155 - IAI46_01960 0.35 -0.9
421,187 + IAI46_01960 0.39 -1.5
421,188 - IAI46_01960 0.39 +0.4
421,188 - IAI46_01960 0.39 -0.6
421,209 + IAI46_01960 0.41 -1.3
421,209 + IAI46_01960 0.41 -1.0
421,210 - IAI46_01960 0.42 +1.1
421,210 - IAI46_01960 0.42 +0.4
421,227 - IAI46_01960 0.44 +0.4
421,262 + IAI46_01960 0.47 -1.2
421,262 + IAI46_01960 0.47 +0.2
421,262 + IAI46_01960 0.47 -1.7
421,262 + IAI46_01960 0.47 -1.3
421,262 + IAI46_01960 0.47 +2.0
421,263 - IAI46_01960 0.48 -0.6
421,265 + IAI46_01960 0.48 +1.6
421,310 + IAI46_01960 0.53 -0.6
421,311 - IAI46_01960 0.53 +0.3
421,352 + IAI46_01960 0.58 -0.1
421,392 + IAI46_01960 0.62 -0.2
421,392 + IAI46_01960 0.62 -0.8
421,444 + IAI46_01960 0.68 -1.7
421,444 + IAI46_01960 0.68 -0.3
421,444 + IAI46_01960 0.68 -1.1
421,457 + IAI46_01960 0.69 -1.2
421,556 + IAI46_01960 0.81 -0.3
421,556 + IAI46_01960 0.81 +0.4
421,557 - IAI46_01960 0.81 +0.1
421,557 - IAI46_01960 0.81 +0.1
421,560 + IAI46_01960 0.81 -0.2
421,561 - IAI46_01960 0.81 +1.4
421,564 + IAI46_01960 0.82 +0.1
421,564 + IAI46_01960 0.82 -1.2
421,565 - IAI46_01960 0.82 -0.6
421,571 + IAI46_01960 0.82 -1.2
421,571 + IAI46_01960 0.82 -0.4
421,571 + IAI46_01960 0.82 +1.0
421,571 + IAI46_01960 0.82 -0.2
421,575 + IAI46_01960 0.83 -0.2
421,575 + IAI46_01960 0.83 -0.4
421,575 + IAI46_01960 0.83 -0.3
421,576 - IAI46_01960 0.83 -0.2
421,576 - IAI46_01960 0.83 -0.3
421,639 + -0.9
421,639 + +0.1
421,658 + -0.8
421,683 + +0.2
421,724 + +0.1
421,725 - +1.1
421,740 - +0.6
421,752 + -0.9
421,753 - +1.1
421,810 + +1.0
421,878 + IAI46_01965 0.43 +0.1
421,878 + IAI46_01965 0.43 +0.8
421,878 + IAI46_01965 0.43 +0.5
421,893 + IAI46_01965 0.62 -1.8

Or see this region's nucleotide sequence