Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01640 and IAI46_01645 are separated by 63 nucleotides IAI46_01645 and IAI46_01650 are separated by 97 nucleotides IAI46_01650 and IAI46_01655 are separated by 500 nucleotides IAI46_01655 and IAI46_01660 are separated by 59 nucleotides
IAI46_01640: IAI46_01640 - protease modulator HflC, at 359,731 to 360,738
_01640
IAI46_01645: IAI46_01645 - DUF2065 domain-containing protein, at 360,802 to 361,002
_01645
IAI46_01650: IAI46_01650 - adenylosuccinate synthase, at 361,100 to 362,398
_01650
IAI46_01655: IAI46_01655 - nitric oxide-sensing transcriptional repressor NsrR, at 362,899 to 363,324
_01655
IAI46_01660: IAI46_01660 - ribonuclease R, at 363,384 to 365,870
_01660
Position (kb) 361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 360.165 kb on + strand, within IAI46_01640 at 360.408 kb on + strand, within IAI46_01640 at 360.408 kb on + strand, within IAI46_01640 at 360.408 kb on + strand, within IAI46_01640 at 360.409 kb on - strand, within IAI46_01640 at 360.493 kb on + strand, within IAI46_01640 at 360.494 kb on - strand, within IAI46_01640 at 360.494 kb on - strand, within IAI46_01640 at 360.528 kb on + strand, within IAI46_01640 at 360.529 kb on - strand, within IAI46_01640 at 360.538 kb on - strand, within IAI46_01640 at 360.538 kb on - strand, within IAI46_01640 at 360.610 kb on + strand, within IAI46_01640 at 360.611 kb on - strand, within IAI46_01640 at 360.638 kb on - strand at 360.749 kb on + strand at 360.749 kb on + strand at 360.749 kb on + strand at 360.750 kb on - strand at 360.894 kb on - strand, within IAI46_01645 at 360.894 kb on - strand, within IAI46_01645 at 360.921 kb on + strand, within IAI46_01645 at 360.921 kb on + strand, within IAI46_01645 at 360.922 kb on - strand, within IAI46_01645 at 360.922 kb on - strand, within IAI46_01645 at 360.948 kb on - strand, within IAI46_01645 at 360.971 kb on - strand, within IAI46_01645 at 360.971 kb on - strand, within IAI46_01645 at 360.974 kb on - strand, within IAI46_01645 at 360.974 kb on - strand, within IAI46_01645 at 360.974 kb on - strand, within IAI46_01645 at 360.985 kb on - strand at 361.020 kb on - strand at 361.147 kb on + strand at 361.524 kb on + strand, within IAI46_01650 at 361.667 kb on + strand, within IAI46_01650 at 362.216 kb on + strand, within IAI46_01650 at 362.294 kb on + strand at 362.396 kb on + strand at 362.396 kb on + strand at 362.397 kb on - strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.416 kb on + strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.417 kb on - strand at 362.517 kb on - strand at 362.573 kb on + strand at 362.573 kb on + strand at 362.574 kb on - strand at 362.598 kb on + strand at 362.598 kb on + strand at 362.599 kb on - strand at 362.599 kb on - strand at 362.607 kb on + strand at 362.607 kb on + strand at 362.608 kb on - strand at 362.608 kb on - strand at 362.608 kb on - strand at 362.608 kb on - strand at 362.666 kb on + strand at 362.666 kb on + strand at 362.666 kb on + strand at 362.667 kb on - strand at 362.667 kb on - strand at 362.667 kb on - strand at 362.670 kb on - strand at 362.685 kb on + strand at 362.686 kb on - strand at 362.789 kb on + strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.821 kb on + strand at 362.822 kb on - strand at 362.831 kb on + strand at 362.835 kb on + strand at 362.835 kb on + strand at 362.894 kb on + strand at 362.895 kb on - strand at 362.895 kb on - strand at 362.895 kb on - strand at 362.895 kb on - strand at 362.923 kb on + strand at 362.944 kb on + strand, within IAI46_01655 at 362.944 kb on + strand, within IAI46_01655 at 362.945 kb on - strand, within IAI46_01655 at 362.945 kb on - strand, within IAI46_01655 at 363.001 kb on + strand, within IAI46_01655 at 363.021 kb on + strand, within IAI46_01655 at 363.021 kb on + strand, within IAI46_01655 at 363.022 kb on - strand, within IAI46_01655 at 363.026 kb on + strand, within IAI46_01655 at 363.026 kb on + strand, within IAI46_01655 at 363.026 kb on + strand, within IAI46_01655 at 363.027 kb on - strand, within IAI46_01655 at 363.027 kb on - strand, within IAI46_01655 at 363.165 kb on + strand, within IAI46_01655 at 363.177 kb on + strand, within IAI46_01655 at 363.192 kb on - strand, within IAI46_01655 at 363.233 kb on + strand, within IAI46_01655 at 363.234 kb on - strand, within IAI46_01655 at 363.258 kb on + strand, within IAI46_01655 at 363.276 kb on + strand, within IAI46_01655 at 363.301 kb on + strand at 363.301 kb on + strand at 363.302 kb on - strand at 363.308 kb on + strand at 363.308 kb on + strand at 363.308 kb on + strand at 363.309 kb on - strand at 363.309 kb on - strand at 363.309 kb on - strand at 363.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 360,165 + IAI46_01640 0.43 +0.7 360,408 + IAI46_01640 0.67 -0.0 360,408 + IAI46_01640 0.67 -0.2 360,408 + IAI46_01640 0.67 -0.0 360,409 - IAI46_01640 0.67 -1.6 360,493 + IAI46_01640 0.76 +0.2 360,494 - IAI46_01640 0.76 +1.5 360,494 - IAI46_01640 0.76 +0.9 360,528 + IAI46_01640 0.79 +0.1 360,529 - IAI46_01640 0.79 -0.1 360,538 - IAI46_01640 0.80 -0.3 360,538 - IAI46_01640 0.80 +0.3 360,610 + IAI46_01640 0.87 +0.2 360,611 - IAI46_01640 0.87 +0.6 360,638 - +0.6 360,749 + -1.1 360,749 + -0.6 360,749 + -0.1 360,750 - +0.2 360,894 - IAI46_01645 0.46 -0.3 360,894 - IAI46_01645 0.46 +0.0 360,921 + IAI46_01645 0.59 -1.1 360,921 + IAI46_01645 0.59 -1.8 360,922 - IAI46_01645 0.60 -0.3 360,922 - IAI46_01645 0.60 +0.9 360,948 - IAI46_01645 0.73 +0.1 360,971 - IAI46_01645 0.84 +0.3 360,971 - IAI46_01645 0.84 -0.1 360,974 - IAI46_01645 0.86 -0.1 360,974 - IAI46_01645 0.86 +0.1 360,974 - IAI46_01645 0.86 -0.1 360,985 - +0.1 361,020 - +0.8 361,147 + -1.0 361,524 + IAI46_01650 0.33 -0.7 361,667 + IAI46_01650 0.44 +1.9 362,216 + IAI46_01650 0.86 -0.7 362,294 + -1.5 362,396 + -0.0 362,396 + +0.6 362,397 - +0.1 362,416 + +0.1 362,416 + +0.2 362,416 + +0.3 362,416 + -0.5 362,416 + +0.2 362,417 - +0.6 362,417 - +0.2 362,417 - +0.9 362,417 - +0.8 362,417 - +0.7 362,417 - +2.3 362,517 - -0.1 362,573 + +1.0 362,573 + -0.2 362,574 - +0.0 362,598 + +0.6 362,598 + +1.0 362,599 - -0.5 362,599 - -0.2 362,607 + -0.1 362,607 + +0.5 362,608 - -0.1 362,608 - -0.8 362,608 - -0.4 362,608 - -0.2 362,666 + -0.3 362,666 + -1.1 362,666 + -0.6 362,667 - -0.4 362,667 - -0.7 362,667 - -0.2 362,670 - +0.6 362,685 + +0.1 362,686 - -0.5 362,789 + -0.3 362,794 - +0.3 362,794 - +0.3 362,821 + -0.8 362,822 - +0.5 362,831 + +0.5 362,835 + -0.5 362,835 + +0.4 362,894 + -0.1 362,895 - +0.6 362,895 - -1.4 362,895 - -0.3 362,895 - +1.5 362,923 + +1.0 362,944 + IAI46_01655 0.11 +1.0 362,944 + IAI46_01655 0.11 -0.8 362,945 - IAI46_01655 0.11 +0.0 362,945 - IAI46_01655 0.11 -0.5 363,001 + IAI46_01655 0.24 +1.3 363,021 + IAI46_01655 0.29 +2.1 363,021 + IAI46_01655 0.29 -2.4 363,022 - IAI46_01655 0.29 +1.3 363,026 + IAI46_01655 0.30 +0.5 363,026 + IAI46_01655 0.30 -0.5 363,026 + IAI46_01655 0.30 -0.6 363,027 - IAI46_01655 0.30 -0.7 363,027 - IAI46_01655 0.30 -0.0 363,165 + IAI46_01655 0.62 +0.1 363,177 + IAI46_01655 0.65 +0.8 363,192 - IAI46_01655 0.69 +0.5 363,233 + IAI46_01655 0.78 +0.9 363,234 - IAI46_01655 0.79 -0.4 363,258 + IAI46_01655 0.84 +0.8 363,276 + IAI46_01655 0.88 +0.5 363,301 + +0.1 363,301 + -0.1 363,302 - +1.5 363,308 + -0.1 363,308 + +0.1 363,308 + -0.3 363,309 - -0.8 363,309 - +1.0 363,309 - -1.1 363,309 - +0.0
Or see this region's nucleotide sequence