Strain Fitness in Serratia liquefaciens MT49 around IAI46_00810

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00805 and IAI46_00810 overlap by 11 nucleotidesIAI46_00810 and IAI46_00815 overlap by 4 nucleotides IAI46_00805: IAI46_00805 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 183,186 to 184,829 _00805 IAI46_00810: IAI46_00810 - glycerol-3-phosphate dehydrogenase subunit GlpB, at 184,819 to 186,090 _00810 IAI46_00815: IAI46_00815 - anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 186,087 to 187,286 _00815 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -1 0 1 2at 183.844 kb on - strand, within IAI46_00805at 183.989 kb on + strand, within IAI46_00805at 183.990 kb on - strand, within IAI46_00805at 184.012 kb on - strand, within IAI46_00805at 184.119 kb on + strand, within IAI46_00805at 184.119 kb on + strand, within IAI46_00805at 184.120 kb on - strand, within IAI46_00805at 184.120 kb on - strand, within IAI46_00805at 184.141 kb on + strand, within IAI46_00805at 184.229 kb on + strand, within IAI46_00805at 184.230 kb on - strand, within IAI46_00805at 184.230 kb on - strand, within IAI46_00805at 184.230 kb on - strand, within IAI46_00805at 184.260 kb on + strand, within IAI46_00805at 184.261 kb on - strand, within IAI46_00805at 184.312 kb on + strand, within IAI46_00805at 184.312 kb on + strand, within IAI46_00805at 184.328 kb on + strand, within IAI46_00805at 184.329 kb on - strand, within IAI46_00805at 184.478 kb on + strand, within IAI46_00805at 184.479 kb on - strand, within IAI46_00805at 184.479 kb on - strand, within IAI46_00805at 184.524 kb on + strand, within IAI46_00805at 184.533 kb on - strand, within IAI46_00805at 184.551 kb on - strand, within IAI46_00805at 184.647 kb on - strand, within IAI46_00805at 184.757 kb on + strandat 184.833 kb on - strandat 184.933 kb on + strandat 184.934 kb on - strandat 185.045 kb on - strand, within IAI46_00810at 185.045 kb on - strand, within IAI46_00810at 185.045 kb on - strand, within IAI46_00810at 185.102 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.343 kb on + strand, within IAI46_00810at 185.344 kb on - strand, within IAI46_00810at 185.344 kb on - strand, within IAI46_00810at 185.344 kb on - strand, within IAI46_00810at 185.399 kb on + strand, within IAI46_00810at 185.400 kb on - strand, within IAI46_00810at 185.400 kb on - strand, within IAI46_00810at 185.403 kb on + strand, within IAI46_00810at 185.403 kb on + strand, within IAI46_00810at 185.414 kb on + strand, within IAI46_00810at 185.638 kb on + strand, within IAI46_00810at 185.652 kb on + strand, within IAI46_00810at 185.710 kb on + strand, within IAI46_00810at 185.711 kb on - strand, within IAI46_00810at 185.713 kb on - strand, within IAI46_00810at 185.713 kb on - strand, within IAI46_00810at 185.782 kb on - strand, within IAI46_00810at 185.810 kb on + strand, within IAI46_00810at 185.810 kb on + strand, within IAI46_00810at 185.811 kb on - strand, within IAI46_00810at 185.811 kb on - strand, within IAI46_00810at 185.841 kb on + strand, within IAI46_00810at 185.841 kb on + strand, within IAI46_00810at 185.842 kb on - strand, within IAI46_00810at 185.844 kb on + strand, within IAI46_00810at 185.844 kb on + strand, within IAI46_00810at 185.844 kb on + strand, within IAI46_00810at 185.844 kb on + strand, within IAI46_00810at 185.845 kb on - strand, within IAI46_00810at 185.845 kb on - strand, within IAI46_00810at 185.845 kb on - strand, within IAI46_00810at 185.896 kb on + strand, within IAI46_00810at 185.897 kb on - strand, within IAI46_00810at 185.897 kb on - strand, within IAI46_00810at 185.897 kb on - strand, within IAI46_00810at 185.897 kb on - strand, within IAI46_00810at 185.897 kb on - strand, within IAI46_00810at 185.968 kb on + strandat 185.969 kb on - strandat 185.969 kb on - strandat 185.969 kb on - strandat 185.969 kb on - strandat 185.995 kb on + strandat 186.072 kb on - strandat 186.147 kb on + strandat 186.147 kb on + strandat 186.148 kb on - strandat 186.148 kb on - strandat 186.148 kb on - strandat 186.148 kb on - strandat 186.148 kb on - strandat 186.178 kb on - strandat 186.241 kb on - strand, within IAI46_00815at 186.258 kb on + strand, within IAI46_00815at 186.259 kb on - strand, within IAI46_00815at 186.259 kb on - strand, within IAI46_00815at 186.387 kb on - strand, within IAI46_00815at 186.513 kb on + strand, within IAI46_00815at 186.513 kb on + strand, within IAI46_00815at 186.513 kb on + strand, within IAI46_00815at 186.514 kb on - strand, within IAI46_00815at 186.612 kb on + strand, within IAI46_00815at 186.612 kb on + strand, within IAI46_00815at 186.612 kb on + strand, within IAI46_00815at 186.613 kb on - strand, within IAI46_00815at 186.613 kb on - strand, within IAI46_00815at 186.613 kb on - strand, within IAI46_00815at 186.683 kb on + strand, within IAI46_00815at 186.827 kb on + strand, within IAI46_00815at 186.833 kb on + strand, within IAI46_00815at 186.834 kb on - strand, within IAI46_00815at 186.872 kb on + strand, within IAI46_00815at 186.872 kb on + strand, within IAI46_00815at 186.873 kb on - strand, within IAI46_00815at 186.978 kb on + strand, within IAI46_00815at 186.978 kb on + strand, within IAI46_00815at 186.979 kb on - strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.984 kb on - strand, within IAI46_00815at 187.020 kb on + strand, within IAI46_00815at 187.021 kb on - strand, within IAI46_00815at 187.021 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.033 kb on + strand, within IAI46_00815at 187.034 kb on - strand, within IAI46_00815at 187.034 kb on - strand, within IAI46_00815at 187.066 kb on + strand, within IAI46_00815at 187.066 kb on + strand, within IAI46_00815at 187.067 kb on - strand, within IAI46_00815at 187.067 kb on - strand, within IAI46_00815at 187.069 kb on + strand, within IAI46_00815at 187.069 kb on + strand, within IAI46_00815at 187.069 kb on + strand, within IAI46_00815

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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183,844 - IAI46_00805 0.40 -0.4
183,989 + IAI46_00805 0.49 +0.2
183,990 - IAI46_00805 0.49 +0.9
184,012 - IAI46_00805 0.50 +0.3
184,119 + IAI46_00805 0.57 +0.5
184,119 + IAI46_00805 0.57 +1.0
184,120 - IAI46_00805 0.57 -0.1
184,120 - IAI46_00805 0.57 +0.9
184,141 + IAI46_00805 0.58 +0.6
184,229 + IAI46_00805 0.63 -0.1
184,230 - IAI46_00805 0.64 +0.3
184,230 - IAI46_00805 0.64 -0.2
184,230 - IAI46_00805 0.64 -0.9
184,260 + IAI46_00805 0.65 -0.4
184,261 - IAI46_00805 0.65 +0.5
184,312 + IAI46_00805 0.68 +0.5
184,312 + IAI46_00805 0.68 -0.2
184,328 + IAI46_00805 0.69 -0.4
184,329 - IAI46_00805 0.70 +1.2
184,478 + IAI46_00805 0.79 +0.1
184,479 - IAI46_00805 0.79 -1.0
184,479 - IAI46_00805 0.79 +0.4
184,524 + IAI46_00805 0.81 -0.4
184,533 - IAI46_00805 0.82 +1.0
184,551 - IAI46_00805 0.83 -0.2
184,647 - IAI46_00805 0.89 -0.8
184,757 + +0.4
184,833 - -0.0
184,933 + +0.2
184,934 - +0.6
185,045 - IAI46_00810 0.18 +1.7
185,045 - IAI46_00810 0.18 -0.6
185,045 - IAI46_00810 0.18 +0.1
185,102 + IAI46_00810 0.22 +0.1
185,343 + IAI46_00810 0.41 -0.2
185,343 + IAI46_00810 0.41 -0.2
185,343 + IAI46_00810 0.41 +0.5
185,343 + IAI46_00810 0.41 -0.0
185,344 - IAI46_00810 0.41 +0.6
185,344 - IAI46_00810 0.41 +0.2
185,344 - IAI46_00810 0.41 +0.5
185,399 + IAI46_00810 0.46 +1.1
185,400 - IAI46_00810 0.46 +0.5
185,400 - IAI46_00810 0.46 +1.2
185,403 + IAI46_00810 0.46 +0.3
185,403 + IAI46_00810 0.46 -1.4
185,414 + IAI46_00810 0.47 +0.2
185,638 + IAI46_00810 0.64 -1.1
185,652 + IAI46_00810 0.65 +0.6
185,710 + IAI46_00810 0.70 +0.4
185,711 - IAI46_00810 0.70 -0.6
185,713 - IAI46_00810 0.70 +0.6
185,713 - IAI46_00810 0.70 +0.3
185,782 - IAI46_00810 0.76 -0.2
185,810 + IAI46_00810 0.78 +0.1
185,810 + IAI46_00810 0.78 +0.3
185,811 - IAI46_00810 0.78 -0.7
185,811 - IAI46_00810 0.78 -0.1
185,841 + IAI46_00810 0.80 -0.8
185,841 + IAI46_00810 0.80 +1.2
185,842 - IAI46_00810 0.80 -0.3
185,844 + IAI46_00810 0.81 +1.0
185,844 + IAI46_00810 0.81 -0.2
185,844 + IAI46_00810 0.81 +0.7
185,844 + IAI46_00810 0.81 -0.5
185,845 - IAI46_00810 0.81 -0.2
185,845 - IAI46_00810 0.81 +1.2
185,845 - IAI46_00810 0.81 +1.7
185,896 + IAI46_00810 0.85 +0.0
185,897 - IAI46_00810 0.85 +0.6
185,897 - IAI46_00810 0.85 -1.3
185,897 - IAI46_00810 0.85 +0.3
185,897 - IAI46_00810 0.85 +0.7
185,897 - IAI46_00810 0.85 +0.4
185,968 + -0.2
185,969 - +1.8
185,969 - +0.1
185,969 - +0.7
185,969 - -0.7
185,995 + +0.3
186,072 - -0.7
186,147 + -0.0
186,147 + +0.1
186,148 - +0.5
186,148 - +0.1
186,148 - +1.3
186,148 - +0.1
186,148 - +0.0
186,178 - +0.8
186,241 - IAI46_00815 0.13 +0.5
186,258 + IAI46_00815 0.14 +0.3
186,259 - IAI46_00815 0.14 -0.3
186,259 - IAI46_00815 0.14 -0.4
186,387 - IAI46_00815 0.25 -0.1
186,513 + IAI46_00815 0.35 +0.2
186,513 + IAI46_00815 0.35 +0.7
186,513 + IAI46_00815 0.35 +0.6
186,514 - IAI46_00815 0.36 +0.1
186,612 + IAI46_00815 0.44 -0.2
186,612 + IAI46_00815 0.44 +0.4
186,612 + IAI46_00815 0.44 +0.5
186,613 - IAI46_00815 0.44 +0.2
186,613 - IAI46_00815 0.44 -0.0
186,613 - IAI46_00815 0.44 -0.7
186,683 + IAI46_00815 0.50 +0.4
186,827 + IAI46_00815 0.62 -0.8
186,833 + IAI46_00815 0.62 +0.3
186,834 - IAI46_00815 0.62 +0.5
186,872 + IAI46_00815 0.65 +1.4
186,872 + IAI46_00815 0.65 -0.0
186,873 - IAI46_00815 0.66 -0.5
186,978 + IAI46_00815 0.74 +0.3
186,978 + IAI46_00815 0.74 +0.2
186,979 - IAI46_00815 0.74 +0.4
186,983 + IAI46_00815 0.75 +0.1
186,983 + IAI46_00815 0.75 -0.3
186,983 + IAI46_00815 0.75 -0.7
186,983 + IAI46_00815 0.75 +0.6
186,984 - IAI46_00815 0.75 +0.2
187,020 + IAI46_00815 0.78 -0.7
187,021 - IAI46_00815 0.78 -0.2
187,021 - IAI46_00815 0.78 -0.9
187,023 - IAI46_00815 0.78 +0.1
187,023 - IAI46_00815 0.78 +1.0
187,023 - IAI46_00815 0.78 +0.3
187,023 - IAI46_00815 0.78 +0.3
187,023 - IAI46_00815 0.78 +0.5
187,033 + IAI46_00815 0.79 -0.4
187,034 - IAI46_00815 0.79 +0.6
187,034 - IAI46_00815 0.79 -0.7
187,066 + IAI46_00815 0.82 +0.2
187,066 + IAI46_00815 0.82 -0.0
187,067 - IAI46_00815 0.82 +0.9
187,067 - IAI46_00815 0.82 +0.5
187,069 + IAI46_00815 0.82 +0.3
187,069 + IAI46_00815 0.82 +0.4
187,069 + IAI46_00815 0.82 +0.1

Or see this region's nucleotide sequence