Strain Fitness in Serratia liquefaciens MT49 around IAI46_00620

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00610 and IAI46_00615 are separated by 48 nucleotidesIAI46_00615 and IAI46_00620 overlap by 23 nucleotidesIAI46_00620 and IAI46_00625 overlap by 14 nucleotides IAI46_00610: IAI46_00610 - dTDP-glucose 4,6-dehydratase, at 144,816 to 145,889 _00610 IAI46_00615: IAI46_00615 - glucose-1-phosphate thymidylyltransferase RfbA, at 145,938 to 146,819 _00615 IAI46_00620: IAI46_00620 - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 146,797 to 147,528 _00620 IAI46_00625: IAI46_00625 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 147,515 to 148,645 _00625 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1 2at 145.857 kb on + strandat 145.857 kb on + strandat 145.857 kb on + strandat 145.858 kb on - strandat 145.887 kb on + strandat 145.893 kb on + strandat 145.938 kb on - strandat 145.946 kb on + strandat 145.950 kb on - strandat 145.950 kb on - strandat 145.950 kb on - strandat 146.023 kb on - strandat 146.040 kb on + strand, within IAI46_00615at 146.040 kb on + strand, within IAI46_00615at 146.040 kb on + strand, within IAI46_00615at 146.040 kb on + strand, within IAI46_00615at 146.041 kb on - strand, within IAI46_00615at 146.157 kb on - strand, within IAI46_00615at 146.167 kb on - strand, within IAI46_00615at 146.167 kb on - strand, within IAI46_00615at 146.210 kb on - strand, within IAI46_00615at 146.264 kb on + strand, within IAI46_00615at 146.265 kb on - strand, within IAI46_00615at 146.316 kb on - strand, within IAI46_00615at 146.388 kb on - strand, within IAI46_00615at 146.458 kb on - strand, within IAI46_00615at 146.529 kb on - strand, within IAI46_00615at 146.548 kb on - strand, within IAI46_00615at 146.548 kb on - strand, within IAI46_00615at 146.548 kb on - strand, within IAI46_00615at 146.676 kb on - strand, within IAI46_00615at 146.779 kb on - strandat 146.779 kb on - strandat 146.779 kb on - strandat 146.791 kb on + strandat 146.792 kb on - strandat 146.825 kb on + strandat 146.826 kb on - strandat 146.918 kb on - strand, within IAI46_00620at 146.918 kb on - strand, within IAI46_00620at 146.934 kb on + strand, within IAI46_00620at 147.093 kb on + strand, within IAI46_00620at 147.094 kb on - strand, within IAI46_00620at 147.094 kb on - strand, within IAI46_00620at 147.101 kb on + strand, within IAI46_00620at 147.157 kb on + strand, within IAI46_00620at 147.157 kb on + strand, within IAI46_00620at 147.185 kb on - strand, within IAI46_00620at 147.307 kb on - strand, within IAI46_00620at 147.345 kb on + strand, within IAI46_00620at 147.346 kb on - strand, within IAI46_00620at 147.351 kb on + strand, within IAI46_00620at 147.351 kb on + strand, within IAI46_00620at 147.352 kb on - strand, within IAI46_00620at 147.352 kb on - strand, within IAI46_00620at 147.352 kb on - strand, within IAI46_00620at 147.449 kb on + strand, within IAI46_00620at 147.502 kb on + strandat 147.502 kb on + strandat 147.502 kb on + strandat 147.502 kb on + strandat 147.503 kb on - strandat 147.526 kb on + strandat 147.526 kb on + strandat 147.527 kb on - strandat 147.560 kb on + strandat 147.560 kb on + strandat 147.561 kb on - strandat 147.562 kb on + strandat 147.562 kb on + strandat 147.562 kb on + strandat 147.562 kb on + strandat 147.562 kb on + strandat 147.562 kb on + strandat 147.562 kb on + strandat 147.563 kb on - strandat 147.563 kb on - strandat 147.563 kb on - strandat 147.611 kb on - strandat 147.611 kb on - strandat 147.963 kb on + strand, within IAI46_00625at 147.964 kb on - strand, within IAI46_00625at 147.995 kb on + strand, within IAI46_00625at 147.995 kb on + strand, within IAI46_00625at 147.996 kb on - strand, within IAI46_00625at 147.996 kb on - strand, within IAI46_00625at 147.996 kb on - strand, within IAI46_00625at 148.027 kb on + strand, within IAI46_00625at 148.039 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.184 kb on + strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.185 kb on - strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.186 kb on + strand, within IAI46_00625at 148.187 kb on - strand, within IAI46_00625at 148.187 kb on - strand, within IAI46_00625at 148.211 kb on + strand, within IAI46_00625at 148.212 kb on - strand, within IAI46_00625at 148.239 kb on - strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.304 kb on + strand, within IAI46_00625at 148.305 kb on - strand, within IAI46_00625at 148.307 kb on + strand, within IAI46_00625at 148.307 kb on + strand, within IAI46_00625at 148.308 kb on - strand, within IAI46_00625at 148.379 kb on - strand, within IAI46_00625at 148.394 kb on + strand, within IAI46_00625at 148.395 kb on - strand, within IAI46_00625at 148.395 kb on - strand, within IAI46_00625at 148.411 kb on + strand, within IAI46_00625

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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145,857 + +0.2
145,857 + +0.4
145,857 + +0.4
145,858 - +0.3
145,887 + +1.2
145,893 + -0.5
145,938 - +0.1
145,946 + -0.4
145,950 - +0.6
145,950 - -0.0
145,950 - +1.1
146,023 - +0.2
146,040 + IAI46_00615 0.12 +0.6
146,040 + IAI46_00615 0.12 +0.2
146,040 + IAI46_00615 0.12 -0.9
146,040 + IAI46_00615 0.12 +2.1
146,041 - IAI46_00615 0.12 +1.0
146,157 - IAI46_00615 0.25 +1.4
146,167 - IAI46_00615 0.26 +0.3
146,167 - IAI46_00615 0.26 +0.6
146,210 - IAI46_00615 0.31 +1.3
146,264 + IAI46_00615 0.37 +1.6
146,265 - IAI46_00615 0.37 +1.0
146,316 - IAI46_00615 0.43 +0.6
146,388 - IAI46_00615 0.51 +1.3
146,458 - IAI46_00615 0.59 +1.2
146,529 - IAI46_00615 0.67 +1.4
146,548 - IAI46_00615 0.69 +1.6
146,548 - IAI46_00615 0.69 +0.5
146,548 - IAI46_00615 0.69 +1.8
146,676 - IAI46_00615 0.84 +1.0
146,779 - +1.0
146,779 - +0.6
146,779 - +0.7
146,791 + +0.3
146,792 - -0.7
146,825 + +1.0
146,826 - +0.4
146,918 - IAI46_00620 0.17 +0.9
146,918 - IAI46_00620 0.17 +1.0
146,934 + IAI46_00620 0.19 +1.3
147,093 + IAI46_00620 0.40 -0.0
147,094 - IAI46_00620 0.41 +0.7
147,094 - IAI46_00620 0.41 +0.2
147,101 + IAI46_00620 0.42 +0.6
147,157 + IAI46_00620 0.49 +0.9
147,157 + IAI46_00620 0.49 -1.2
147,185 - IAI46_00620 0.53 +0.2
147,307 - IAI46_00620 0.70 +2.0
147,345 + IAI46_00620 0.75 +0.5
147,346 - IAI46_00620 0.75 +1.0
147,351 + IAI46_00620 0.76 -0.3
147,351 + IAI46_00620 0.76 +0.5
147,352 - IAI46_00620 0.76 -0.3
147,352 - IAI46_00620 0.76 +0.6
147,352 - IAI46_00620 0.76 +0.7
147,449 + IAI46_00620 0.89 +0.1
147,502 + +0.9
147,502 + -1.3
147,502 + +1.4
147,502 + +1.3
147,503 - +0.2
147,526 + +0.3
147,526 + +0.6
147,527 - -0.1
147,560 + +1.0
147,560 + +1.0
147,561 - +1.3
147,562 + +0.7
147,562 + -0.1
147,562 + -0.1
147,562 + -0.6
147,562 + +2.1
147,562 + +1.2
147,562 + -1.4
147,563 - -0.8
147,563 - +0.6
147,563 - +0.5
147,611 - +1.8
147,611 - +1.1
147,963 + IAI46_00625 0.40 -1.4
147,964 - IAI46_00625 0.40 +0.6
147,995 + IAI46_00625 0.42 +0.5
147,995 + IAI46_00625 0.42 +0.8
147,996 - IAI46_00625 0.43 +1.4
147,996 - IAI46_00625 0.43 +0.2
147,996 - IAI46_00625 0.43 -0.8
148,027 + IAI46_00625 0.45 +0.2
148,039 + IAI46_00625 0.46 -0.3
148,184 + IAI46_00625 0.59 +1.4
148,184 + IAI46_00625 0.59 +0.1
148,184 + IAI46_00625 0.59 -1.4
148,184 + IAI46_00625 0.59 +1.2
148,184 + IAI46_00625 0.59 -0.1
148,184 + IAI46_00625 0.59 +0.5
148,185 - IAI46_00625 0.59 +0.3
148,185 - IAI46_00625 0.59 -0.9
148,185 - IAI46_00625 0.59 +2.1
148,185 - IAI46_00625 0.59 -1.2
148,185 - IAI46_00625 0.59 +0.6
148,185 - IAI46_00625 0.59 +1.6
148,185 - IAI46_00625 0.59 -0.0
148,186 + IAI46_00625 0.59 -0.4
148,186 + IAI46_00625 0.59 +0.9
148,186 + IAI46_00625 0.59 +0.6
148,186 + IAI46_00625 0.59 -0.2
148,187 - IAI46_00625 0.59 +0.1
148,187 - IAI46_00625 0.59 +1.6
148,211 + IAI46_00625 0.62 +0.6
148,212 - IAI46_00625 0.62 +1.4
148,239 - IAI46_00625 0.64 -0.1
148,304 + IAI46_00625 0.70 +2.0
148,304 + IAI46_00625 0.70 +1.4
148,304 + IAI46_00625 0.70 +0.7
148,304 + IAI46_00625 0.70 +1.4
148,304 + IAI46_00625 0.70 +1.8
148,305 - IAI46_00625 0.70 +0.3
148,307 + IAI46_00625 0.70 +0.8
148,307 + IAI46_00625 0.70 -0.6
148,308 - IAI46_00625 0.70 +0.4
148,379 - IAI46_00625 0.76 -0.5
148,394 + IAI46_00625 0.78 +0.6
148,395 - IAI46_00625 0.78 +0.4
148,395 - IAI46_00625 0.78 -0.0
148,411 + IAI46_00625 0.79 +1.2

Or see this region's nucleotide sequence