Strain Fitness in Serratia liquefaciens MT49 around IAI46_00600

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00595 and IAI46_00600 are separated by 84 nucleotidesIAI46_00600 and IAI46_00605 overlap by 4 nucleotides IAI46_00595: IAI46_00595 - ECA polysaccharide chain length modulation protein, at 141,296 to 142,348 _00595 IAI46_00600: IAI46_00600 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 142,433 to 143,566 _00600 IAI46_00605: IAI46_00605 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 143,563 to 144,825 _00605 Position (kb) 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 141.443 kb on + strand, within IAI46_00595at 141.444 kb on - strand, within IAI46_00595at 141.478 kb on + strand, within IAI46_00595at 141.515 kb on + strand, within IAI46_00595at 141.515 kb on + strand, within IAI46_00595at 141.516 kb on - strand, within IAI46_00595at 141.539 kb on - strand, within IAI46_00595at 141.539 kb on - strand, within IAI46_00595at 141.553 kb on + strand, within IAI46_00595at 141.554 kb on - strand, within IAI46_00595at 141.554 kb on - strand, within IAI46_00595at 141.602 kb on + strand, within IAI46_00595at 141.602 kb on + strand, within IAI46_00595at 141.603 kb on - strand, within IAI46_00595at 141.604 kb on + strand, within IAI46_00595at 141.605 kb on - strand, within IAI46_00595at 141.613 kb on + strand, within IAI46_00595at 141.614 kb on - strand, within IAI46_00595at 141.616 kb on + strand, within IAI46_00595at 141.617 kb on - strand, within IAI46_00595at 141.632 kb on + strand, within IAI46_00595at 141.672 kb on - strand, within IAI46_00595at 141.731 kb on - strand, within IAI46_00595at 141.807 kb on + strand, within IAI46_00595at 141.808 kb on - strand, within IAI46_00595at 141.834 kb on - strand, within IAI46_00595at 141.834 kb on - strand, within IAI46_00595at 141.837 kb on + strand, within IAI46_00595at 141.837 kb on + strand, within IAI46_00595at 141.870 kb on + strand, within IAI46_00595at 141.904 kb on + strand, within IAI46_00595at 141.905 kb on - strand, within IAI46_00595at 141.928 kb on + strand, within IAI46_00595at 141.959 kb on + strand, within IAI46_00595at 141.959 kb on + strand, within IAI46_00595at 141.960 kb on - strand, within IAI46_00595at 142.087 kb on + strand, within IAI46_00595at 142.087 kb on + strand, within IAI46_00595at 142.088 kb on - strand, within IAI46_00595at 142.113 kb on + strand, within IAI46_00595at 142.113 kb on + strand, within IAI46_00595at 142.113 kb on + strand, within IAI46_00595at 142.114 kb on - strand, within IAI46_00595at 142.114 kb on - strand, within IAI46_00595at 142.214 kb on + strand, within IAI46_00595at 142.269 kb on + strandat 142.270 kb on - strandat 142.270 kb on - strandat 142.360 kb on + strandat 142.360 kb on + strandat 142.360 kb on + strandat 142.360 kb on + strandat 142.492 kb on - strandat 142.492 kb on - strandat 142.569 kb on + strand, within IAI46_00600at 142.587 kb on + strand, within IAI46_00600at 142.587 kb on + strand, within IAI46_00600at 142.588 kb on - strand, within IAI46_00600at 142.599 kb on - strand, within IAI46_00600at 142.599 kb on - strand, within IAI46_00600at 142.632 kb on + strand, within IAI46_00600at 142.633 kb on - strand, within IAI46_00600at 142.633 kb on - strand, within IAI46_00600at 142.754 kb on + strand, within IAI46_00600at 142.755 kb on - strand, within IAI46_00600at 142.779 kb on + strand, within IAI46_00600at 142.779 kb on + strand, within IAI46_00600at 142.780 kb on - strand, within IAI46_00600at 142.862 kb on + strand, within IAI46_00600at 142.863 kb on - strand, within IAI46_00600at 142.927 kb on + strand, within IAI46_00600at 142.927 kb on + strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 142.928 kb on - strand, within IAI46_00600at 143.138 kb on - strand, within IAI46_00600at 143.162 kb on + strand, within IAI46_00600at 143.224 kb on + strand, within IAI46_00600at 143.225 kb on - strand, within IAI46_00600at 143.227 kb on + strand, within IAI46_00600at 143.227 kb on + strand, within IAI46_00600at 143.228 kb on - strand, within IAI46_00600at 143.228 kb on - strand, within IAI46_00600at 143.228 kb on - strand, within IAI46_00600at 143.238 kb on + strand, within IAI46_00600at 143.239 kb on - strand, within IAI46_00600at 143.252 kb on + strand, within IAI46_00600at 143.252 kb on + strand, within IAI46_00600at 143.252 kb on + strand, within IAI46_00600at 143.253 kb on - strand, within IAI46_00600at 143.267 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.285 kb on + strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.286 kb on - strand, within IAI46_00600at 143.287 kb on + strand, within IAI46_00600at 143.287 kb on + strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.288 kb on - strand, within IAI46_00600at 143.334 kb on + strand, within IAI46_00600at 143.334 kb on + strand, within IAI46_00600at 143.335 kb on - strand, within IAI46_00600at 143.338 kb on + strand, within IAI46_00600at 143.339 kb on - strand, within IAI46_00600at 143.339 kb on - strand, within IAI46_00600at 143.386 kb on - strand, within IAI46_00600at 143.421 kb on + strand, within IAI46_00600at 143.472 kb on - strandat 143.494 kb on + strandat 143.495 kb on - strandat 143.571 kb on + strandat 143.599 kb on + strandat 143.600 kb on - strandat 143.601 kb on + strandat 143.601 kb on + strandat 143.683 kb on - strandat 143.851 kb on + strand, within IAI46_00605at 144.029 kb on - strand, within IAI46_00605at 144.029 kb on - strand, within IAI46_00605at 144.324 kb on + strand, within IAI46_00605at 144.360 kb on + strand, within IAI46_00605at 144.382 kb on - strand, within IAI46_00605

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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141,443 + IAI46_00595 0.14 -0.6
141,444 - IAI46_00595 0.14 -0.6
141,478 + IAI46_00595 0.17 -0.7
141,515 + IAI46_00595 0.21 +0.3
141,515 + IAI46_00595 0.21 +0.2
141,516 - IAI46_00595 0.21 +0.2
141,539 - IAI46_00595 0.23 +0.9
141,539 - IAI46_00595 0.23 -0.1
141,553 + IAI46_00595 0.24 -0.7
141,554 - IAI46_00595 0.25 +1.2
141,554 - IAI46_00595 0.25 +0.8
141,602 + IAI46_00595 0.29 -0.6
141,602 + IAI46_00595 0.29 +1.1
141,603 - IAI46_00595 0.29 -0.8
141,604 + IAI46_00595 0.29 +0.1
141,605 - IAI46_00595 0.29 +0.7
141,613 + IAI46_00595 0.30 +0.2
141,614 - IAI46_00595 0.30 -1.1
141,616 + IAI46_00595 0.30 +0.7
141,617 - IAI46_00595 0.30 -0.1
141,632 + IAI46_00595 0.32 -1.4
141,672 - IAI46_00595 0.36 +1.6
141,731 - IAI46_00595 0.41 +0.2
141,807 + IAI46_00595 0.49 +2.0
141,808 - IAI46_00595 0.49 -0.7
141,834 - IAI46_00595 0.51 +0.2
141,834 - IAI46_00595 0.51 +1.0
141,837 + IAI46_00595 0.51 -0.8
141,837 + IAI46_00595 0.51 +1.2
141,870 + IAI46_00595 0.55 -1.1
141,904 + IAI46_00595 0.58 -0.7
141,905 - IAI46_00595 0.58 -0.5
141,928 + IAI46_00595 0.60 +1.2
141,959 + IAI46_00595 0.63 +0.5
141,959 + IAI46_00595 0.63 +0.3
141,960 - IAI46_00595 0.63 -0.1
142,087 + IAI46_00595 0.75 +0.2
142,087 + IAI46_00595 0.75 +0.7
142,088 - IAI46_00595 0.75 -1.4
142,113 + IAI46_00595 0.78 -0.1
142,113 + IAI46_00595 0.78 -0.4
142,113 + IAI46_00595 0.78 +0.0
142,114 - IAI46_00595 0.78 +0.6
142,114 - IAI46_00595 0.78 +0.4
142,214 + IAI46_00595 0.87 -1.1
142,269 + +0.5
142,270 - +0.7
142,270 - -0.0
142,360 + +0.7
142,360 + +0.9
142,360 + +0.1
142,360 + +0.2
142,492 - -1.8
142,492 - +0.3
142,569 + IAI46_00600 0.12 +0.1
142,587 + IAI46_00600 0.14 +1.3
142,587 + IAI46_00600 0.14 +0.3
142,588 - IAI46_00600 0.14 +1.6
142,599 - IAI46_00600 0.15 +0.6
142,599 - IAI46_00600 0.15 +1.7
142,632 + IAI46_00600 0.18 +0.6
142,633 - IAI46_00600 0.18 +0.9
142,633 - IAI46_00600 0.18 +0.8
142,754 + IAI46_00600 0.28 -0.0
142,755 - IAI46_00600 0.28 +0.3
142,779 + IAI46_00600 0.31 -0.1
142,779 + IAI46_00600 0.31 +0.9
142,780 - IAI46_00600 0.31 +0.5
142,862 + IAI46_00600 0.38 +0.0
142,863 - IAI46_00600 0.38 -0.4
142,927 + IAI46_00600 0.44 +0.6
142,927 + IAI46_00600 0.44 +0.7
142,928 - IAI46_00600 0.44 +1.2
142,928 - IAI46_00600 0.44 +0.5
142,928 - IAI46_00600 0.44 +0.6
142,928 - IAI46_00600 0.44 +0.1
143,138 - IAI46_00600 0.62 +0.3
143,162 + IAI46_00600 0.64 +0.8
143,224 + IAI46_00600 0.70 -0.0
143,225 - IAI46_00600 0.70 +0.8
143,227 + IAI46_00600 0.70 +2.6
143,227 + IAI46_00600 0.70 +1.0
143,228 - IAI46_00600 0.70 +1.2
143,228 - IAI46_00600 0.70 +0.3
143,228 - IAI46_00600 0.70 +0.4
143,238 + IAI46_00600 0.71 -0.8
143,239 - IAI46_00600 0.71 -0.1
143,252 + IAI46_00600 0.72 +0.4
143,252 + IAI46_00600 0.72 -0.4
143,252 + IAI46_00600 0.72 +0.2
143,253 - IAI46_00600 0.72 -1.8
143,267 + IAI46_00600 0.74 +0.6
143,285 + IAI46_00600 0.75 +1.1
143,285 + IAI46_00600 0.75 +0.8
143,285 + IAI46_00600 0.75 +0.8
143,285 + IAI46_00600 0.75 +0.1
143,285 + IAI46_00600 0.75 +1.1
143,285 + IAI46_00600 0.75 +0.5
143,286 - IAI46_00600 0.75 -1.1
143,286 - IAI46_00600 0.75 +0.1
143,286 - IAI46_00600 0.75 +1.0
143,286 - IAI46_00600 0.75 +0.1
143,286 - IAI46_00600 0.75 +0.0
143,287 + IAI46_00600 0.75 -1.3
143,287 + IAI46_00600 0.75 +1.7
143,288 - IAI46_00600 0.75 +0.4
143,288 - IAI46_00600 0.75 +1.6
143,288 - IAI46_00600 0.75 -2.1
143,288 - IAI46_00600 0.75 +1.7
143,288 - IAI46_00600 0.75 +0.3
143,288 - IAI46_00600 0.75 +1.6
143,288 - IAI46_00600 0.75 +1.0
143,334 + IAI46_00600 0.79 +0.4
143,334 + IAI46_00600 0.79 +1.7
143,335 - IAI46_00600 0.80 +0.7
143,338 + IAI46_00600 0.80 -1.0
143,339 - IAI46_00600 0.80 -0.4
143,339 - IAI46_00600 0.80 +0.4
143,386 - IAI46_00600 0.84 +0.7
143,421 + IAI46_00600 0.87 +0.0
143,472 - -0.6
143,494 + -0.3
143,495 - -0.0
143,571 + -0.7
143,599 + -0.5
143,600 - +0.7
143,601 + +0.1
143,601 + +2.0
143,683 - -0.3
143,851 + IAI46_00605 0.23 +1.0
144,029 - IAI46_00605 0.37 -0.8
144,029 - IAI46_00605 0.37 +0.4
144,324 + IAI46_00605 0.60 +1.1
144,360 + IAI46_00605 0.63 -0.4
144,382 - IAI46_00605 0.65 +0.2

Or see this region's nucleotide sequence