Strain Fitness in Serratia liquefaciens MT49 around IAI46_00305

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00300 and IAI46_00305 are separated by 67 nucleotidesIAI46_00305 and IAI46_00310 overlap by 50 nucleotidesIAI46_00310 and IAI46_00315 are separated by 5 nucleotides IAI46_00300: IAI46_00300 - DNA-binding transcriptional regulator, at 70,712 to 71,890 _00300 IAI46_00305: IAI46_00305 - nucleotidyltransferase domain-containing protein, at 71,958 to 72,578 _00305 IAI46_00310: IAI46_00310 - DNA-binding protein, at 72,529 to 72,969 _00310 IAI46_00315: IAI46_00315 - LysR family transcriptional regulator, at 72,975 to 73,829 _00315 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.970 kb on + strand, within IAI46_00300at 70.970 kb on + strand, within IAI46_00300at 70.971 kb on - strand, within IAI46_00300at 70.971 kb on - strand, within IAI46_00300at 70.971 kb on - strand, within IAI46_00300at 70.989 kb on - strand, within IAI46_00300at 71.003 kb on + strand, within IAI46_00300at 71.003 kb on + strand, within IAI46_00300at 71.003 kb on + strand, within IAI46_00300at 71.004 kb on - strand, within IAI46_00300at 71.004 kb on - strand, within IAI46_00300at 71.069 kb on - strand, within IAI46_00300at 71.069 kb on - strand, within IAI46_00300at 71.084 kb on + strand, within IAI46_00300at 71.084 kb on + strand, within IAI46_00300at 71.084 kb on + strand, within IAI46_00300at 71.084 kb on + strand, within IAI46_00300at 71.107 kb on + strand, within IAI46_00300at 71.165 kb on + strand, within IAI46_00300at 71.165 kb on + strand, within IAI46_00300at 71.165 kb on + strand, within IAI46_00300at 71.180 kb on + strand, within IAI46_00300at 71.244 kb on + strand, within IAI46_00300at 71.387 kb on + strand, within IAI46_00300at 71.387 kb on + strand, within IAI46_00300at 71.500 kb on + strand, within IAI46_00300at 71.501 kb on - strand, within IAI46_00300at 71.501 kb on - strand, within IAI46_00300at 71.501 kb on - strand, within IAI46_00300at 71.588 kb on + strand, within IAI46_00300at 71.588 kb on + strand, within IAI46_00300at 71.588 kb on + strand, within IAI46_00300at 71.588 kb on + strand, within IAI46_00300at 71.589 kb on - strand, within IAI46_00300at 71.589 kb on - strand, within IAI46_00300at 71.590 kb on + strand, within IAI46_00300at 71.608 kb on + strand, within IAI46_00300at 71.609 kb on - strand, within IAI46_00300at 71.609 kb on - strand, within IAI46_00300at 71.614 kb on + strand, within IAI46_00300at 71.615 kb on - strand, within IAI46_00300at 71.644 kb on - strand, within IAI46_00300at 71.709 kb on + strand, within IAI46_00300at 71.709 kb on + strand, within IAI46_00300at 71.709 kb on + strand, within IAI46_00300at 71.709 kb on + strand, within IAI46_00300at 71.710 kb on - strand, within IAI46_00300at 71.710 kb on - strand, within IAI46_00300at 71.741 kb on - strand, within IAI46_00300at 71.749 kb on - strand, within IAI46_00300at 71.795 kb on + strandat 71.810 kb on + strandat 71.817 kb on - strandat 71.871 kb on - strandat 71.885 kb on + strandat 71.886 kb on - strandat 71.888 kb on + strandat 71.888 kb on + strandat 71.888 kb on + strandat 71.889 kb on - strandat 71.933 kb on + strandat 71.934 kb on - strandat 71.937 kb on - strandat 71.937 kb on - strandat 71.942 kb on + strandat 71.961 kb on + strandat 71.961 kb on + strandat 72.023 kb on - strand, within IAI46_00305at 72.023 kb on - strand, within IAI46_00305at 72.087 kb on - strand, within IAI46_00305at 72.134 kb on - strand, within IAI46_00305at 72.160 kb on - strand, within IAI46_00305at 72.251 kb on - strand, within IAI46_00305at 72.312 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.335 kb on - strand, within IAI46_00305at 72.388 kb on - strand, within IAI46_00305at 72.433 kb on - strand, within IAI46_00305at 72.480 kb on - strand, within IAI46_00305at 72.489 kb on - strand, within IAI46_00305at 72.489 kb on - strand, within IAI46_00305at 72.492 kb on - strand, within IAI46_00305at 72.492 kb on - strand, within IAI46_00305at 72.498 kb on - strand, within IAI46_00305at 72.498 kb on - strand, within IAI46_00305at 72.509 kb on - strand, within IAI46_00305at 72.509 kb on - strand, within IAI46_00305at 72.537 kb on - strandat 72.548 kb on + strandat 72.548 kb on + strandat 72.548 kb on + strandat 72.549 kb on - strandat 72.569 kb on + strandat 72.569 kb on + strandat 72.569 kb on + strandat 72.569 kb on + strandat 72.570 kb on - strandat 72.570 kb on - strandat 72.570 kb on - strandat 72.570 kb on - strandat 72.648 kb on + strand, within IAI46_00310at 72.649 kb on - strand, within IAI46_00310at 72.649 kb on - strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.676 kb on + strand, within IAI46_00310at 72.677 kb on - strand, within IAI46_00310at 72.678 kb on + strand, within IAI46_00310at 72.679 kb on - strand, within IAI46_00310at 72.741 kb on + strand, within IAI46_00310at 72.741 kb on + strand, within IAI46_00310at 72.741 kb on + strand, within IAI46_00310at 72.742 kb on - strand, within IAI46_00310at 72.742 kb on - strand, within IAI46_00310at 72.742 kb on - strand, within IAI46_00310at 72.761 kb on + strand, within IAI46_00310at 72.762 kb on - strand, within IAI46_00310at 72.853 kb on + strand, within IAI46_00310at 72.853 kb on + strand, within IAI46_00310at 72.854 kb on - strand, within IAI46_00310at 72.854 kb on - strand, within IAI46_00310at 72.854 kb on - strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.857 kb on + strand, within IAI46_00310at 72.858 kb on - strand, within IAI46_00310at 72.866 kb on + strand, within IAI46_00310at 72.866 kb on + strand, within IAI46_00310at 72.867 kb on - strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.886 kb on + strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.887 kb on - strand, within IAI46_00310at 72.927 kb on + strandat 72.967 kb on + strandat 73.045 kb on + strandat 73.046 kb on - strandat 73.048 kb on + strandat 73.048 kb on + strandat 73.048 kb on + strandat 73.049 kb on - strandat 73.199 kb on - strand, within IAI46_00315at 73.322 kb on + strand, within IAI46_00315at 73.370 kb on + strand, within IAI46_00315at 73.415 kb on - strand, within IAI46_00315at 73.415 kb on - strand, within IAI46_00315at 73.418 kb on - strand, within IAI46_00315at 73.503 kb on - strand, within IAI46_00315at 73.560 kb on - strand, within IAI46_00315

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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70,970 + IAI46_00300 0.22 +0.1
70,970 + IAI46_00300 0.22 +0.4
70,971 - IAI46_00300 0.22 +1.0
70,971 - IAI46_00300 0.22 +0.3
70,971 - IAI46_00300 0.22 +0.5
70,989 - IAI46_00300 0.23 -0.2
71,003 + IAI46_00300 0.25 -2.0
71,003 + IAI46_00300 0.25 -0.2
71,003 + IAI46_00300 0.25 +0.0
71,004 - IAI46_00300 0.25 +0.6
71,004 - IAI46_00300 0.25 +0.7
71,069 - IAI46_00300 0.30 -0.2
71,069 - IAI46_00300 0.30 -0.1
71,084 + IAI46_00300 0.32 +1.0
71,084 + IAI46_00300 0.32 +0.4
71,084 + IAI46_00300 0.32 -1.1
71,084 + IAI46_00300 0.32 +0.5
71,107 + IAI46_00300 0.34 +0.8
71,165 + IAI46_00300 0.38 +0.5
71,165 + IAI46_00300 0.38 -0.1
71,165 + IAI46_00300 0.38 -0.4
71,180 + IAI46_00300 0.40 +0.1
71,244 + IAI46_00300 0.45 -0.4
71,387 + IAI46_00300 0.57 -0.4
71,387 + IAI46_00300 0.57 +0.6
71,500 + IAI46_00300 0.67 -0.0
71,501 - IAI46_00300 0.67 +0.2
71,501 - IAI46_00300 0.67 -0.2
71,501 - IAI46_00300 0.67 +0.1
71,588 + IAI46_00300 0.74 -0.4
71,588 + IAI46_00300 0.74 -0.4
71,588 + IAI46_00300 0.74 -0.8
71,588 + IAI46_00300 0.74 +0.5
71,589 - IAI46_00300 0.74 +1.1
71,589 - IAI46_00300 0.74 -0.3
71,590 + IAI46_00300 0.74 -0.4
71,608 + IAI46_00300 0.76 -0.3
71,609 - IAI46_00300 0.76 +0.3
71,609 - IAI46_00300 0.76 -0.6
71,614 + IAI46_00300 0.77 +0.9
71,615 - IAI46_00300 0.77 -0.2
71,644 - IAI46_00300 0.79 -0.2
71,709 + IAI46_00300 0.85 +0.5
71,709 + IAI46_00300 0.85 +0.3
71,709 + IAI46_00300 0.85 -0.5
71,709 + IAI46_00300 0.85 -0.5
71,710 - IAI46_00300 0.85 -0.6
71,710 - IAI46_00300 0.85 +0.3
71,741 - IAI46_00300 0.87 -0.2
71,749 - IAI46_00300 0.88 +1.1
71,795 + +0.0
71,810 + +1.0
71,817 - -0.3
71,871 - -0.8
71,885 + +0.1
71,886 - +0.1
71,888 + +0.6
71,888 + -0.4
71,888 + +0.4
71,889 - +0.1
71,933 + -0.2
71,934 - -0.4
71,937 - -0.4
71,937 - +0.5
71,942 + -0.4
71,961 + -0.8
71,961 + +0.1
72,023 - IAI46_00305 0.10 -0.4
72,023 - IAI46_00305 0.10 -0.2
72,087 - IAI46_00305 0.21 -0.4
72,134 - IAI46_00305 0.28 -0.3
72,160 - IAI46_00305 0.33 +0.1
72,251 - IAI46_00305 0.47 +1.3
72,312 - IAI46_00305 0.57 +0.6
72,335 - IAI46_00305 0.61 +0.5
72,335 - IAI46_00305 0.61 +0.2
72,335 - IAI46_00305 0.61 +0.2
72,335 - IAI46_00305 0.61 -0.1
72,388 - IAI46_00305 0.69 +0.7
72,433 - IAI46_00305 0.76 -0.0
72,480 - IAI46_00305 0.84 +0.1
72,489 - IAI46_00305 0.86 +1.0
72,489 - IAI46_00305 0.86 +0.3
72,492 - IAI46_00305 0.86 +0.4
72,492 - IAI46_00305 0.86 -1.1
72,498 - IAI46_00305 0.87 -0.8
72,498 - IAI46_00305 0.87 +0.8
72,509 - IAI46_00305 0.89 -0.2
72,509 - IAI46_00305 0.89 -0.3
72,537 - -0.0
72,548 + +0.3
72,548 + -0.6
72,548 + +0.5
72,549 - -1.3
72,569 + -0.3
72,569 + +2.0
72,569 + +0.1
72,569 + -1.8
72,570 - -1.9
72,570 - +0.1
72,570 - -0.3
72,570 - +0.2
72,648 + IAI46_00310 0.27 -0.3
72,649 - IAI46_00310 0.27 +0.4
72,649 - IAI46_00310 0.27 -0.2
72,676 + IAI46_00310 0.33 -0.9
72,676 + IAI46_00310 0.33 +0.6
72,676 + IAI46_00310 0.33 +1.3
72,676 + IAI46_00310 0.33 -0.3
72,677 - IAI46_00310 0.34 +0.6
72,678 + IAI46_00310 0.34 +0.3
72,679 - IAI46_00310 0.34 +0.4
72,741 + IAI46_00310 0.48 +0.1
72,741 + IAI46_00310 0.48 -0.3
72,741 + IAI46_00310 0.48 -0.3
72,742 - IAI46_00310 0.48 +0.8
72,742 - IAI46_00310 0.48 -1.5
72,742 - IAI46_00310 0.48 +0.7
72,761 + IAI46_00310 0.53 +0.4
72,762 - IAI46_00310 0.53 +0.7
72,853 + IAI46_00310 0.73 -0.3
72,853 + IAI46_00310 0.73 -0.8
72,854 - IAI46_00310 0.74 +0.6
72,854 - IAI46_00310 0.74 +0.3
72,854 - IAI46_00310 0.74 +1.0
72,857 + IAI46_00310 0.74 -0.3
72,857 + IAI46_00310 0.74 +0.7
72,857 + IAI46_00310 0.74 +0.7
72,857 + IAI46_00310 0.74 +0.4
72,858 - IAI46_00310 0.75 -0.6
72,866 + IAI46_00310 0.76 +0.1
72,866 + IAI46_00310 0.76 -0.2
72,867 - IAI46_00310 0.77 +0.9
72,886 + IAI46_00310 0.81 -0.3
72,886 + IAI46_00310 0.81 -1.3
72,886 + IAI46_00310 0.81 -0.4
72,886 + IAI46_00310 0.81 +0.2
72,887 - IAI46_00310 0.81 -0.4
72,887 - IAI46_00310 0.81 -0.2
72,887 - IAI46_00310 0.81 +0.7
72,887 - IAI46_00310 0.81 -0.6
72,927 + +0.1
72,967 + +0.2
73,045 + -0.1
73,046 - -0.4
73,048 + +0.6
73,048 + +0.2
73,048 + +0.1
73,049 - +1.1
73,199 - IAI46_00315 0.26 -0.2
73,322 + IAI46_00315 0.41 -0.8
73,370 + IAI46_00315 0.46 -0.7
73,415 - IAI46_00315 0.51 -0.6
73,415 - IAI46_00315 0.51 +1.0
73,418 - IAI46_00315 0.52 +0.6
73,503 - IAI46_00315 0.62 +0.2
73,560 - IAI46_00315 0.68 -0.4

Or see this region's nucleotide sequence