Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00070 and IAI46_00075 are separated by 186 nucleotides IAI46_00075 and IAI46_00080 overlap by 11 nucleotides IAI46_00080 and IAI46_00085 are separated by 47 nucleotides
IAI46_00070: IAI46_00070 - alpha-amylase, at 15,472 to 17,541
_00070
IAI46_00075: IAI46_00075 - ribbon-helix-helix protein, CopG family, at 17,728 to 17,976
_00075
IAI46_00080: IAI46_00080 - type II toxin-antitoxin system RelE/ParE family toxin, at 17,966 to 18,253
_00080
IAI46_00085: IAI46_00085 - glyoxylate/hydroxypyruvate reductase GhrB, at 18,301 to 19,275
_00085
Position (kb) 17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.824 kb on - strand, within IAI46_00070 at 16.904 kb on + strand, within IAI46_00070 at 16.905 kb on - strand, within IAI46_00070 at 16.905 kb on - strand, within IAI46_00070 at 16.958 kb on + strand, within IAI46_00070 at 17.093 kb on + strand, within IAI46_00070 at 17.094 kb on - strand, within IAI46_00070 at 17.227 kb on + strand, within IAI46_00070 at 17.228 kb on - strand, within IAI46_00070 at 17.228 kb on - strand, within IAI46_00070 at 17.228 kb on - strand, within IAI46_00070 at 17.384 kb on + strand at 17.551 kb on + strand at 17.552 kb on - strand at 17.578 kb on + strand at 17.613 kb on + strand at 17.691 kb on + strand at 17.696 kb on + strand at 17.696 kb on + strand at 17.696 kb on + strand at 17.697 kb on - strand at 17.697 kb on - strand at 17.703 kb on + strand at 17.703 kb on + strand at 17.704 kb on - strand at 17.704 kb on - strand at 17.704 kb on - strand at 17.705 kb on + strand at 17.705 kb on + strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.728 kb on - strand at 17.982 kb on + strand at 17.983 kb on - strand at 18.014 kb on + strand, within IAI46_00080 at 18.015 kb on - strand, within IAI46_00080 at 18.015 kb on - strand, within IAI46_00080 at 18.078 kb on + strand, within IAI46_00080 at 18.165 kb on - strand, within IAI46_00080 at 18.177 kb on - strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.198 kb on + strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.199 kb on - strand, within IAI46_00080 at 18.203 kb on - strand, within IAI46_00080 at 18.220 kb on + strand, within IAI46_00080 at 18.281 kb on - strand at 18.281 kb on - strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.299 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.302 kb on + strand at 18.434 kb on - strand, within IAI46_00085 at 18.436 kb on + strand, within IAI46_00085 at 18.437 kb on - strand, within IAI46_00085 at 18.467 kb on - strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.513 kb on + strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.514 kb on - strand, within IAI46_00085 at 18.657 kb on + strand, within IAI46_00085 at 18.658 kb on - strand, within IAI46_00085 at 18.658 kb on - strand, within IAI46_00085 at 18.658 kb on - strand, within IAI46_00085 at 18.715 kb on - strand, within IAI46_00085 at 18.753 kb on + strand, within IAI46_00085 at 18.754 kb on - strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.755 kb on + strand, within IAI46_00085 at 18.756 kb on - strand, within IAI46_00085 at 18.756 kb on - strand, within IAI46_00085 at 18.756 kb on - strand, within IAI46_00085 at 18.810 kb on + strand, within IAI46_00085 at 18.811 kb on - strand, within IAI46_00085 at 18.835 kb on - strand, within IAI46_00085 at 18.919 kb on + strand, within IAI46_00085 at 18.919 kb on + strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085 at 18.920 kb on - strand, within IAI46_00085
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 16,824 - IAI46_00070 0.65 +1.1 16,904 + IAI46_00070 0.69 +0.5 16,905 - IAI46_00070 0.69 +1.1 16,905 - IAI46_00070 0.69 -0.0 16,958 + IAI46_00070 0.72 +0.1 17,093 + IAI46_00070 0.78 +1.7 17,094 - IAI46_00070 0.78 -0.1 17,227 + IAI46_00070 0.85 -0.3 17,228 - IAI46_00070 0.85 +0.2 17,228 - IAI46_00070 0.85 -0.4 17,228 - IAI46_00070 0.85 +0.1 17,384 + +0.3 17,551 + +1.1 17,552 - +0.1 17,578 + +0.6 17,613 + +0.0 17,691 + +0.8 17,696 + +1.0 17,696 + +0.4 17,696 + -0.2 17,697 - -0.8 17,697 - +0.3 17,703 + +0.7 17,703 + +0.1 17,704 - -1.0 17,704 - -0.0 17,704 - -3.2 17,705 + -0.0 17,705 + -0.1 17,728 - +0.5 17,728 - -0.0 17,728 - +0.4 17,728 - -1.0 17,982 + -0.4 17,983 - +0.0 18,014 + IAI46_00080 0.17 -2.4 18,015 - IAI46_00080 0.17 +0.3 18,015 - IAI46_00080 0.17 -0.1 18,078 + IAI46_00080 0.39 -0.8 18,165 - IAI46_00080 0.69 -0.9 18,177 - IAI46_00080 0.73 -1.0 18,198 + IAI46_00080 0.81 -0.5 18,198 + IAI46_00080 0.81 -0.2 18,198 + IAI46_00080 0.81 -0.9 18,198 + IAI46_00080 0.81 +1.3 18,198 + IAI46_00080 0.81 -0.1 18,198 + IAI46_00080 0.81 -1.0 18,199 - IAI46_00080 0.81 +0.8 18,199 - IAI46_00080 0.81 -0.2 18,199 - IAI46_00080 0.81 +1.0 18,203 - IAI46_00080 0.82 +0.4 18,220 + IAI46_00080 0.88 +0.1 18,281 - -0.3 18,281 - -1.5 18,299 + +0.3 18,299 + +0.8 18,299 + -0.8 18,302 + -2.1 18,302 + -0.3 18,302 + +0.7 18,434 - IAI46_00085 0.14 +0.0 18,436 + IAI46_00085 0.14 -0.3 18,437 - IAI46_00085 0.14 -0.6 18,467 - IAI46_00085 0.17 +0.1 18,513 + IAI46_00085 0.22 +0.0 18,513 + IAI46_00085 0.22 -1.2 18,513 + IAI46_00085 0.22 +0.9 18,514 - IAI46_00085 0.22 +0.6 18,514 - IAI46_00085 0.22 +0.0 18,514 - IAI46_00085 0.22 +0.1 18,514 - IAI46_00085 0.22 +1.0 18,514 - IAI46_00085 0.22 +0.5 18,657 + IAI46_00085 0.37 -0.7 18,658 - IAI46_00085 0.37 +0.0 18,658 - IAI46_00085 0.37 +1.4 18,658 - IAI46_00085 0.37 +1.3 18,715 - IAI46_00085 0.42 +0.2 18,753 + IAI46_00085 0.46 +0.6 18,754 - IAI46_00085 0.46 -0.2 18,755 + IAI46_00085 0.47 +0.2 18,755 + IAI46_00085 0.47 -0.3 18,755 + IAI46_00085 0.47 +0.1 18,755 + IAI46_00085 0.47 +0.2 18,755 + IAI46_00085 0.47 -0.2 18,755 + IAI46_00085 0.47 -0.8 18,756 - IAI46_00085 0.47 +2.2 18,756 - IAI46_00085 0.47 -0.4 18,756 - IAI46_00085 0.47 -1.1 18,810 + IAI46_00085 0.52 +0.0 18,811 - IAI46_00085 0.52 -0.4 18,835 - IAI46_00085 0.55 +0.3 18,919 + IAI46_00085 0.63 +0.2 18,919 + IAI46_00085 0.63 +0.2 18,920 - IAI46_00085 0.63 -0.0 18,920 - IAI46_00085 0.63 +0.6 18,920 - IAI46_00085 0.63 -0.2 18,920 - IAI46_00085 0.63 -0.1 18,920 - IAI46_00085 0.63 -0.5
Or see this region's nucleotide sequence