Strain Fitness in Serratia liquefaciens MT49 around IAI46_00030

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00020 and IAI46_00025 are separated by 124 nucleotidesIAI46_00025 and IAI46_00030 are separated by 43 nucleotidesIAI46_00030 and IAI46_00035 overlap by 14 nucleotides IAI46_00020: IAI46_00020 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 3,763 to 6,177 _00020 IAI46_00025: IAI46_00025 - sugar-phosphatase, at 6,302 to 7,117 _00025 IAI46_00030: IAI46_00030 - ornithine cyclodeaminase family protein, at 7,161 to 8,102 _00030 IAI46_00035: IAI46_00035 - threonine/serine dehydratase, at 8,089 to 9,057 _00035 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.175 kb on + strandat 6.176 kb on - strandat 6.176 kb on - strandat 6.176 kb on - strandat 6.269 kb on - strandat 6.328 kb on + strandat 6.328 kb on + strandat 6.329 kb on - strandat 6.459 kb on - strand, within IAI46_00025at 6.459 kb on - strand, within IAI46_00025at 6.459 kb on - strand, within IAI46_00025at 6.459 kb on - strand, within IAI46_00025at 6.499 kb on + strand, within IAI46_00025at 6.500 kb on - strand, within IAI46_00025at 6.502 kb on + strand, within IAI46_00025at 6.502 kb on + strand, within IAI46_00025at 6.502 kb on + strand, within IAI46_00025at 6.502 kb on + strand, within IAI46_00025at 6.503 kb on - strand, within IAI46_00025at 6.503 kb on - strand, within IAI46_00025at 6.506 kb on + strand, within IAI46_00025at 6.507 kb on - strand, within IAI46_00025at 6.507 kb on - strand, within IAI46_00025at 6.507 kb on - strand, within IAI46_00025at 6.507 kb on - strand, within IAI46_00025at 6.507 kb on - strand, within IAI46_00025at 6.508 kb on + strand, within IAI46_00025at 6.509 kb on - strand, within IAI46_00025at 6.534 kb on + strand, within IAI46_00025at 6.535 kb on - strand, within IAI46_00025at 6.535 kb on - strand, within IAI46_00025at 6.535 kb on - strand, within IAI46_00025at 6.578 kb on + strand, within IAI46_00025at 6.578 kb on + strand, within IAI46_00025at 6.579 kb on - strand, within IAI46_00025at 6.579 kb on - strand, within IAI46_00025at 6.579 kb on - strand, within IAI46_00025at 6.585 kb on - strand, within IAI46_00025at 6.620 kb on + strand, within IAI46_00025at 6.621 kb on - strand, within IAI46_00025at 6.647 kb on + strand, within IAI46_00025at 6.647 kb on + strand, within IAI46_00025at 6.647 kb on + strand, within IAI46_00025at 6.647 kb on + strand, within IAI46_00025at 6.647 kb on + strand, within IAI46_00025at 6.647 kb on + strand, within IAI46_00025at 6.647 kb on + strand, within IAI46_00025at 6.648 kb on - strand, within IAI46_00025at 6.648 kb on - strand, within IAI46_00025at 6.648 kb on - strand, within IAI46_00025at 6.648 kb on - strand, within IAI46_00025at 6.649 kb on + strand, within IAI46_00025at 6.649 kb on + strand, within IAI46_00025at 6.649 kb on + strand, within IAI46_00025at 6.649 kb on + strand, within IAI46_00025at 6.649 kb on + strand, within IAI46_00025at 6.649 kb on + strand, within IAI46_00025at 6.650 kb on - strand, within IAI46_00025at 6.650 kb on - strand, within IAI46_00025at 6.650 kb on - strand, within IAI46_00025at 6.650 kb on - strand, within IAI46_00025at 6.674 kb on + strand, within IAI46_00025at 6.675 kb on - strand, within IAI46_00025at 6.716 kb on + strand, within IAI46_00025at 6.717 kb on - strand, within IAI46_00025at 6.717 kb on - strand, within IAI46_00025at 6.833 kb on + strand, within IAI46_00025at 6.833 kb on + strand, within IAI46_00025at 6.834 kb on - strand, within IAI46_00025at 6.834 kb on - strand, within IAI46_00025at 6.835 kb on + strand, within IAI46_00025at 6.835 kb on + strand, within IAI46_00025at 6.835 kb on + strand, within IAI46_00025at 6.836 kb on - strand, within IAI46_00025at 6.836 kb on - strand, within IAI46_00025at 6.836 kb on - strand, within IAI46_00025at 6.857 kb on + strand, within IAI46_00025at 6.858 kb on - strand, within IAI46_00025at 6.877 kb on + strand, within IAI46_00025at 6.877 kb on + strand, within IAI46_00025at 6.878 kb on - strand, within IAI46_00025at 6.889 kb on + strand, within IAI46_00025at 6.889 kb on + strand, within IAI46_00025at 6.990 kb on - strand, within IAI46_00025at 6.990 kb on - strand, within IAI46_00025at 7.067 kb on - strandat 7.116 kb on - strandat 7.116 kb on - strandat 7.162 kb on + strandat 7.162 kb on + strandat 7.163 kb on - strandat 7.164 kb on + strandat 7.164 kb on + strandat 7.280 kb on + strand, within IAI46_00030at 7.281 kb on - strand, within IAI46_00030at 7.284 kb on + strand, within IAI46_00030at 7.284 kb on + strand, within IAI46_00030at 7.345 kb on + strand, within IAI46_00030at 7.345 kb on + strand, within IAI46_00030at 7.352 kb on + strand, within IAI46_00030at 7.352 kb on + strand, within IAI46_00030at 7.353 kb on - strand, within IAI46_00030at 7.353 kb on - strand, within IAI46_00030at 7.441 kb on - strand, within IAI46_00030at 7.515 kb on - strand, within IAI46_00030at 7.515 kb on - strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.559 kb on + strand, within IAI46_00030at 7.560 kb on - strand, within IAI46_00030at 7.560 kb on - strand, within IAI46_00030at 7.560 kb on - strand, within IAI46_00030at 7.560 kb on - strand, within IAI46_00030at 7.560 kb on - strand, within IAI46_00030at 7.662 kb on + strand, within IAI46_00030at 7.663 kb on - strand, within IAI46_00030at 7.663 kb on - strand, within IAI46_00030at 7.706 kb on + strand, within IAI46_00030at 7.706 kb on + strand, within IAI46_00030at 7.706 kb on + strand, within IAI46_00030at 7.706 kb on + strand, within IAI46_00030at 7.707 kb on - strand, within IAI46_00030at 7.710 kb on + strand, within IAI46_00030at 7.710 kb on + strand, within IAI46_00030at 7.710 kb on + strand, within IAI46_00030at 7.711 kb on - strand, within IAI46_00030at 7.711 kb on - strand, within IAI46_00030at 7.773 kb on + strand, within IAI46_00030at 7.774 kb on - strand, within IAI46_00030at 7.880 kb on + strand, within IAI46_00030at 7.885 kb on + strand, within IAI46_00030at 7.946 kb on + strand, within IAI46_00030at 7.946 kb on + strand, within IAI46_00030at 7.946 kb on + strand, within IAI46_00030at 7.947 kb on - strand, within IAI46_00030at 7.987 kb on - strand, within IAI46_00030at 8.001 kb on + strand, within IAI46_00030at 8.024 kb on + strandat 8.025 kb on - strandat 8.025 kb on - strandat 8.044 kb on - strandat 8.044 kb on - strandat 8.077 kb on - strandat 8.077 kb on - strandat 8.121 kb on - strandat 8.213 kb on - strand, within IAI46_00035at 8.265 kb on + strand, within IAI46_00035at 8.265 kb on + strand, within IAI46_00035at 8.266 kb on - strand, within IAI46_00035at 8.335 kb on - strand, within IAI46_00035at 8.337 kb on + strand, within IAI46_00035at 8.337 kb on + strand, within IAI46_00035at 8.337 kb on + strand, within IAI46_00035at 8.337 kb on + strand, within IAI46_00035at 8.338 kb on - strand, within IAI46_00035at 8.338 kb on - strand, within IAI46_00035at 8.338 kb on - strand, within IAI46_00035at 8.338 kb on - strand, within IAI46_00035at 8.379 kb on + strand, within IAI46_00035at 8.416 kb on + strand, within IAI46_00035at 8.416 kb on + strand, within IAI46_00035at 8.426 kb on + strand, within IAI46_00035at 8.426 kb on + strand, within IAI46_00035at 8.426 kb on + strand, within IAI46_00035at 8.426 kb on + strand, within IAI46_00035at 8.512 kb on - strand, within IAI46_00035at 8.512 kb on - strand, within IAI46_00035at 8.616 kb on + strand, within IAI46_00035at 8.616 kb on + strand, within IAI46_00035at 8.617 kb on - strand, within IAI46_00035at 8.618 kb on + strand, within IAI46_00035at 8.618 kb on + strand, within IAI46_00035at 8.619 kb on - strand, within IAI46_00035at 8.619 kb on - strand, within IAI46_00035at 8.630 kb on + strand, within IAI46_00035at 8.630 kb on + strand, within IAI46_00035at 8.630 kb on + strand, within IAI46_00035at 8.631 kb on - strand, within IAI46_00035at 8.680 kb on + strand, within IAI46_00035at 8.681 kb on - strand, within IAI46_00035at 8.704 kb on + strand, within IAI46_00035at 8.705 kb on - strand, within IAI46_00035at 8.765 kb on + strand, within IAI46_00035at 8.884 kb on - strand, within IAI46_00035at 8.887 kb on - strand, within IAI46_00035at 8.904 kb on + strand, within IAI46_00035at 8.974 kb on + strandat 8.974 kb on + strandat 8.974 kb on + strandat 8.974 kb on + strandat 8.974 kb on + strandat 8.975 kb on - strandat 9.047 kb on - strandat 9.047 kb on - strandat 9.069 kb on + strandat 9.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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6,175 + +0.6
6,176 - +0.3
6,176 - -1.2
6,176 - +0.1
6,269 - -0.0
6,328 + +0.6
6,328 + -0.1
6,329 - +2.6
6,459 - IAI46_00025 0.19 -0.6
6,459 - IAI46_00025 0.19 +0.3
6,459 - IAI46_00025 0.19 -0.3
6,459 - IAI46_00025 0.19 -0.1
6,499 + IAI46_00025 0.24 +0.7
6,500 - IAI46_00025 0.24 +0.3
6,502 + IAI46_00025 0.25 +0.4
6,502 + IAI46_00025 0.25 +0.0
6,502 + IAI46_00025 0.25 +0.3
6,502 + IAI46_00025 0.25 +0.3
6,503 - IAI46_00025 0.25 -0.2
6,503 - IAI46_00025 0.25 -2.2
6,506 + IAI46_00025 0.25 +0.6
6,507 - IAI46_00025 0.25 +0.1
6,507 - IAI46_00025 0.25 +0.2
6,507 - IAI46_00025 0.25 +0.3
6,507 - IAI46_00025 0.25 +0.4
6,507 - IAI46_00025 0.25 +0.2
6,508 + IAI46_00025 0.25 +0.9
6,509 - IAI46_00025 0.25 -0.3
6,534 + IAI46_00025 0.28 -1.3
6,535 - IAI46_00025 0.29 -0.3
6,535 - IAI46_00025 0.29 +0.2
6,535 - IAI46_00025 0.29 -1.4
6,578 + IAI46_00025 0.34 +0.1
6,578 + IAI46_00025 0.34 +0.1
6,579 - IAI46_00025 0.34 -0.1
6,579 - IAI46_00025 0.34 +0.2
6,579 - IAI46_00025 0.34 +0.2
6,585 - IAI46_00025 0.35 -0.6
6,620 + IAI46_00025 0.39 -0.6
6,621 - IAI46_00025 0.39 -0.3
6,647 + IAI46_00025 0.42 +0.9
6,647 + IAI46_00025 0.42 -0.8
6,647 + IAI46_00025 0.42 -0.3
6,647 + IAI46_00025 0.42 -0.2
6,647 + IAI46_00025 0.42 +1.4
6,647 + IAI46_00025 0.42 +0.1
6,647 + IAI46_00025 0.42 -0.3
6,648 - IAI46_00025 0.42 -0.0
6,648 - IAI46_00025 0.42 +0.6
6,648 - IAI46_00025 0.42 -0.7
6,648 - IAI46_00025 0.42 -0.3
6,649 + IAI46_00025 0.43 -1.1
6,649 + IAI46_00025 0.43 +0.3
6,649 + IAI46_00025 0.43 -0.1
6,649 + IAI46_00025 0.43 +0.2
6,649 + IAI46_00025 0.43 -0.3
6,649 + IAI46_00025 0.43 +0.0
6,650 - IAI46_00025 0.43 +0.2
6,650 - IAI46_00025 0.43 +0.2
6,650 - IAI46_00025 0.43 -0.9
6,650 - IAI46_00025 0.43 -0.3
6,674 + IAI46_00025 0.46 +0.2
6,675 - IAI46_00025 0.46 -0.1
6,716 + IAI46_00025 0.51 +0.5
6,717 - IAI46_00025 0.51 -0.1
6,717 - IAI46_00025 0.51 +1.2
6,833 + IAI46_00025 0.65 +0.6
6,833 + IAI46_00025 0.65 +0.1
6,834 - IAI46_00025 0.65 +0.6
6,834 - IAI46_00025 0.65 +1.3
6,835 + IAI46_00025 0.65 +0.6
6,835 + IAI46_00025 0.65 +0.5
6,835 + IAI46_00025 0.65 +0.9
6,836 - IAI46_00025 0.65 +1.2
6,836 - IAI46_00025 0.65 -0.5
6,836 - IAI46_00025 0.65 +0.2
6,857 + IAI46_00025 0.68 -0.3
6,858 - IAI46_00025 0.68 +0.3
6,877 + IAI46_00025 0.70 +0.4
6,877 + IAI46_00025 0.70 -0.5
6,878 - IAI46_00025 0.71 -0.6
6,889 + IAI46_00025 0.72 +0.6
6,889 + IAI46_00025 0.72 +0.7
6,990 - IAI46_00025 0.84 +0.4
6,990 - IAI46_00025 0.84 +0.4
7,067 - +0.1
7,116 - +0.6
7,116 - +0.3
7,162 + +0.5
7,162 + -0.8
7,163 - +0.7
7,164 + +0.9
7,164 + -0.2
7,280 + IAI46_00030 0.13 +0.5
7,281 - IAI46_00030 0.13 +0.0
7,284 + IAI46_00030 0.13 +0.0
7,284 + IAI46_00030 0.13 -0.6
7,345 + IAI46_00030 0.20 -0.7
7,345 + IAI46_00030 0.20 -0.1
7,352 + IAI46_00030 0.20 -0.8
7,352 + IAI46_00030 0.20 +0.5
7,353 - IAI46_00030 0.20 -1.4
7,353 - IAI46_00030 0.20 +0.9
7,441 - IAI46_00030 0.30 +0.2
7,515 - IAI46_00030 0.38 -1.0
7,515 - IAI46_00030 0.38 -0.1
7,559 + IAI46_00030 0.42 -0.4
7,559 + IAI46_00030 0.42 -0.5
7,559 + IAI46_00030 0.42 +0.2
7,559 + IAI46_00030 0.42 +0.2
7,559 + IAI46_00030 0.42 +0.2
7,559 + IAI46_00030 0.42 -0.2
7,559 + IAI46_00030 0.42 -0.2
7,559 + IAI46_00030 0.42 -0.4
7,559 + IAI46_00030 0.42 +0.4
7,560 - IAI46_00030 0.42 +0.9
7,560 - IAI46_00030 0.42 +0.6
7,560 - IAI46_00030 0.42 +0.5
7,560 - IAI46_00030 0.42 +0.7
7,560 - IAI46_00030 0.42 +0.5
7,662 + IAI46_00030 0.53 -0.2
7,663 - IAI46_00030 0.53 -0.0
7,663 - IAI46_00030 0.53 +0.5
7,706 + IAI46_00030 0.58 -0.1
7,706 + IAI46_00030 0.58 +1.0
7,706 + IAI46_00030 0.58 +0.6
7,706 + IAI46_00030 0.58 -0.1
7,707 - IAI46_00030 0.58 +0.4
7,710 + IAI46_00030 0.58 +0.2
7,710 + IAI46_00030 0.58 +0.4
7,710 + IAI46_00030 0.58 +0.2
7,711 - IAI46_00030 0.58 -0.0
7,711 - IAI46_00030 0.58 -0.2
7,773 + IAI46_00030 0.65 -0.9
7,774 - IAI46_00030 0.65 +0.0
7,880 + IAI46_00030 0.76 -0.2
7,885 + IAI46_00030 0.77 +0.6
7,946 + IAI46_00030 0.83 +0.1
7,946 + IAI46_00030 0.83 -0.1
7,946 + IAI46_00030 0.83 -1.1
7,947 - IAI46_00030 0.83 +0.0
7,987 - IAI46_00030 0.88 +0.1
8,001 + IAI46_00030 0.89 -1.0
8,024 + +0.4
8,025 - +0.6
8,025 - +0.0
8,044 - -0.6
8,044 - +1.2
8,077 - +0.4
8,077 - -1.3
8,121 - +0.3
8,213 - IAI46_00035 0.13 -0.5
8,265 + IAI46_00035 0.18 -0.6
8,265 + IAI46_00035 0.18 +0.1
8,266 - IAI46_00035 0.18 -0.8
8,335 - IAI46_00035 0.25 +0.6
8,337 + IAI46_00035 0.26 -0.3
8,337 + IAI46_00035 0.26 +0.2
8,337 + IAI46_00035 0.26 +0.6
8,337 + IAI46_00035 0.26 -0.2
8,338 - IAI46_00035 0.26 +0.1
8,338 - IAI46_00035 0.26 -0.6
8,338 - IAI46_00035 0.26 +1.1
8,338 - IAI46_00035 0.26 +1.2
8,379 + IAI46_00035 0.30 +0.2
8,416 + IAI46_00035 0.34 +0.2
8,416 + IAI46_00035 0.34 +0.5
8,426 + IAI46_00035 0.35 +2.3
8,426 + IAI46_00035 0.35 -0.4
8,426 + IAI46_00035 0.35 +0.0
8,426 + IAI46_00035 0.35 +0.5
8,512 - IAI46_00035 0.44 +0.2
8,512 - IAI46_00035 0.44 -0.3
8,616 + IAI46_00035 0.54 -0.4
8,616 + IAI46_00035 0.54 -0.2
8,617 - IAI46_00035 0.54 +0.6
8,618 + IAI46_00035 0.55 -0.1
8,618 + IAI46_00035 0.55 -0.5
8,619 - IAI46_00035 0.55 +0.3
8,619 - IAI46_00035 0.55 +0.3
8,630 + IAI46_00035 0.56 +0.9
8,630 + IAI46_00035 0.56 +0.1
8,630 + IAI46_00035 0.56 +1.1
8,631 - IAI46_00035 0.56 +0.1
8,680 + IAI46_00035 0.61 +0.4
8,681 - IAI46_00035 0.61 +0.0
8,704 + IAI46_00035 0.63 -0.2
8,705 - IAI46_00035 0.64 -0.2
8,765 + IAI46_00035 0.70 +1.2
8,884 - IAI46_00035 0.82 -0.2
8,887 - IAI46_00035 0.82 +0.2
8,904 + IAI46_00035 0.84 +0.8
8,974 + -0.1
8,974 + +0.4
8,974 + +0.0
8,974 + +0.5
8,974 + -0.5
8,975 - -0.8
9,047 - +0.3
9,047 - -0.4
9,069 + +1.9
9,070 - -0.1

Or see this region's nucleotide sequence