Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2927

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2926 and Echvi_2927 are separated by 69 nucleotidesEchvi_2927 and Echvi_2928 are separated by 10 nucleotidesEchvi_2928 and Echvi_2929 are separated by 66 nucleotides Echvi_2926: Echvi_2926 - Transketolase, C-terminal subunit, at 3,503,925 to 3,504,893 _2926 Echvi_2927: Echvi_2927 - Transketolase, N-terminal subunit, at 3,504,963 to 3,505,814 _2927 Echvi_2928: Echvi_2928 - Peroxiredoxin, at 3,505,825 to 3,506,274 _2928 Echvi_2929: Echvi_2929 - Membrane proteins related to metalloendopeptidases, at 3,506,341 to 3,508,182 _2929 Position (kb) 3504 3505 3506Strain fitness (log2 ratio) -2 -1 0 1at 3505.915 kb on - strand, within Echvi_2928at 3505.929 kb on + strand, within Echvi_2928at 3505.929 kb on + strand, within Echvi_2928at 3505.929 kb on + strand, within Echvi_2928at 3505.930 kb on - strand, within Echvi_2928at 3505.930 kb on - strand, within Echvi_2928at 3505.930 kb on - strand, within Echvi_2928at 3505.930 kb on - strand, within Echvi_2928at 3505.930 kb on - strand, within Echvi_2928at 3505.931 kb on + strand, within Echvi_2928at 3505.931 kb on + strand, within Echvi_2928at 3505.932 kb on - strand, within Echvi_2928at 3505.932 kb on - strand, within Echvi_2928at 3505.932 kb on - strand, within Echvi_2928at 3505.973 kb on - strand, within Echvi_2928at 3505.973 kb on - strand, within Echvi_2928at 3505.982 kb on - strand, within Echvi_2928at 3506.078 kb on - strand, within Echvi_2928at 3506.085 kb on - strand, within Echvi_2928at 3506.085 kb on - strand, within Echvi_2928at 3506.109 kb on - strand, within Echvi_2928at 3506.120 kb on - strand, within Echvi_2928at 3506.165 kb on + strand, within Echvi_2928at 3506.194 kb on - strand, within Echvi_2928at 3506.209 kb on + strand, within Echvi_2928at 3506.288 kb on - strandat 3506.370 kb on + strandat 3506.380 kb on - strandat 3506.392 kb on + strandat 3506.471 kb on - strandat 3506.542 kb on + strand, within Echvi_2929at 3506.542 kb on + strand, within Echvi_2929at 3506.578 kb on - strand, within Echvi_2929at 3506.602 kb on + strand, within Echvi_2929at 3506.676 kb on - strand, within Echvi_2929at 3506.727 kb on - strand, within Echvi_2929at 3506.769 kb on - strand, within Echvi_2929at 3506.813 kb on + strand, within Echvi_2929at 3506.814 kb on - strand, within Echvi_2929

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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3,505,915 - Echvi_2928 0.20 +0.6
3,505,929 + Echvi_2928 0.23 -2.0
3,505,929 + Echvi_2928 0.23 -0.7
3,505,929 + Echvi_2928 0.23 -1.6
3,505,930 - Echvi_2928 0.23 -0.1
3,505,930 - Echvi_2928 0.23 -0.0
3,505,930 - Echvi_2928 0.23 -0.1
3,505,930 - Echvi_2928 0.23 -0.5
3,505,930 - Echvi_2928 0.23 -1.5
3,505,931 + Echvi_2928 0.24 -0.4
3,505,931 + Echvi_2928 0.24 -0.5
3,505,932 - Echvi_2928 0.24 +0.2
3,505,932 - Echvi_2928 0.24 +0.2
3,505,932 - Echvi_2928 0.24 -0.3
3,505,973 - Echvi_2928 0.33 -0.1
3,505,973 - Echvi_2928 0.33 +0.0
3,505,982 - Echvi_2928 0.35 +0.2
3,506,078 - Echvi_2928 0.56 -1.5
3,506,085 - Echvi_2928 0.58 +0.1
3,506,085 - Echvi_2928 0.58 -0.8
3,506,109 - Echvi_2928 0.63 -0.2
3,506,120 - Echvi_2928 0.66 +0.3
3,506,165 + Echvi_2928 0.76 -1.1
3,506,194 - Echvi_2928 0.82 -0.3
3,506,209 + Echvi_2928 0.85 -0.4
3,506,288 - -0.3
3,506,370 + -1.4
3,506,380 - -0.5
3,506,392 + -1.9
3,506,471 - -0.4
3,506,542 + Echvi_2929 0.11 -0.7
3,506,542 + Echvi_2929 0.11 -1.2
3,506,578 - Echvi_2929 0.13 -0.1
3,506,602 + Echvi_2929 0.14 -0.6
3,506,676 - Echvi_2929 0.18 -0.4
3,506,727 - Echvi_2929 0.21 -0.0
3,506,769 - Echvi_2929 0.23 -1.2
3,506,813 + Echvi_2929 0.26 -0.1
3,506,814 - Echvi_2929 0.26 -1.4

Or see this region's nucleotide sequence