Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21645

Experiment: m.b. Cobalt chloride 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_21640 and CA264_21645 are separated by 437 nucleotidesCA264_21645 and CA264_21650 are separated by 9 nucleotides CA264_21640: CA264_21640 - DDE transposase, at 196,223 to 196,993 _21640 CA264_21645: CA264_21645 - phosphoribosylpyrophosphate synthetase, at 197,431 to 198,324 _21645 CA264_21650: CA264_21650 - thymidine phosphorylase, at 198,334 to 199,827 _21650 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 196.712 kb on + strand, within CA264_21640at 196.816 kb on + strand, within CA264_21640at 196.888 kb on + strand, within CA264_21640at 196.888 kb on + strand, within CA264_21640at 196.889 kb on - strand, within CA264_21640at 196.889 kb on - strand, within CA264_21640at 196.954 kb on - strandat 196.954 kb on - strandat 197.030 kb on - strandat 197.043 kb on + strandat 197.043 kb on + strandat 197.055 kb on + strandat 197.093 kb on - strandat 197.150 kb on + strandat 197.152 kb on + strandat 197.152 kb on + strandat 197.152 kb on + strandat 197.186 kb on + strandat 197.186 kb on + strandat 197.187 kb on - strandat 197.188 kb on + strandat 197.206 kb on + strandat 197.211 kb on - strandat 197.213 kb on + strandat 197.222 kb on - strandat 197.250 kb on + strandat 197.250 kb on + strandat 197.251 kb on - strandat 197.251 kb on - strandat 197.286 kb on - strandat 197.286 kb on - strandat 197.288 kb on + strandat 197.289 kb on - strandat 197.335 kb on + strandat 197.335 kb on + strandat 197.350 kb on + strandat 197.350 kb on + strandat 197.351 kb on - strandat 197.351 kb on - strandat 197.351 kb on - strandat 197.353 kb on + strandat 197.380 kb on + strandat 197.380 kb on + strandat 197.381 kb on - strandat 197.381 kb on - strandat 197.381 kb on - strandat 197.382 kb on + strandat 197.382 kb on + strandat 197.383 kb on - strandat 197.383 kb on - strandat 197.487 kb on + strandat 197.487 kb on + strandat 197.487 kb on + strandat 197.488 kb on - strandat 197.523 kb on + strand, within CA264_21645at 197.623 kb on + strand, within CA264_21645at 197.637 kb on + strand, within CA264_21645at 197.638 kb on - strand, within CA264_21645at 197.652 kb on + strand, within CA264_21645at 197.659 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.663 kb on - strand, within CA264_21645at 197.666 kb on - strand, within CA264_21645at 197.666 kb on - strand, within CA264_21645at 197.667 kb on + strand, within CA264_21645at 197.667 kb on + strand, within CA264_21645at 197.667 kb on + strand, within CA264_21645at 197.668 kb on - strand, within CA264_21645at 197.668 kb on - strand, within CA264_21645at 197.688 kb on + strand, within CA264_21645at 197.722 kb on + strand, within CA264_21645at 197.723 kb on - strand, within CA264_21645at 197.769 kb on - strand, within CA264_21645at 197.801 kb on - strand, within CA264_21645at 197.854 kb on - strand, within CA264_21645at 197.855 kb on + strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.856 kb on - strand, within CA264_21645at 197.860 kb on - strand, within CA264_21645at 197.860 kb on - strand, within CA264_21645at 197.891 kb on - strand, within CA264_21645at 197.912 kb on + strand, within CA264_21645at 197.913 kb on - strand, within CA264_21645at 197.941 kb on + strand, within CA264_21645at 197.958 kb on + strand, within CA264_21645at 197.959 kb on - strand, within CA264_21645at 197.986 kb on + strand, within CA264_21645at 198.036 kb on + strand, within CA264_21645at 198.036 kb on + strandat 198.037 kb on - strand, within CA264_21645at 198.050 kb on + strand, within CA264_21645at 198.051 kb on - strand, within CA264_21645at 198.051 kb on - strand, within CA264_21645at 198.060 kb on - strand, within CA264_21645at 198.151 kb on - strand, within CA264_21645at 198.202 kb on + strand, within CA264_21645at 198.202 kb on + strand, within CA264_21645at 198.206 kb on + strand, within CA264_21645at 198.207 kb on - strand, within CA264_21645at 198.235 kb on - strandat 198.324 kb on + strandat 198.325 kb on - strandat 198.328 kb on + strandat 198.329 kb on - strandat 198.329 kb on - strandat 198.329 kb on - strandat 198.335 kb on + strandat 198.345 kb on + strandat 198.345 kb on + strandat 198.346 kb on - strandat 198.367 kb on + strandat 198.367 kb on + strandat 198.367 kb on + strandat 198.368 kb on + strandat 198.368 kb on - strandat 198.371 kb on + strandat 198.383 kb on + strandat 198.388 kb on + strandat 198.388 kb on + strandat 198.389 kb on - strandat 198.420 kb on - strandat 198.433 kb on + strandat 198.434 kb on - strandat 198.437 kb on - strandat 198.439 kb on + strandat 198.466 kb on + strandat 198.579 kb on + strand, within CA264_21650at 198.603 kb on + strand, within CA264_21650at 198.627 kb on + strand, within CA264_21650at 198.628 kb on - strand, within CA264_21650at 198.679 kb on + strand, within CA264_21650at 198.734 kb on - strand, within CA264_21650at 198.734 kb on - strand, within CA264_21650at 198.736 kb on + strand, within CA264_21650at 198.736 kb on + strand, within CA264_21650at 198.737 kb on - strand, within CA264_21650at 198.740 kb on - strand, within CA264_21650at 198.741 kb on + strand, within CA264_21650at 198.741 kb on + strand, within CA264_21650at 198.783 kb on + strand, within CA264_21650at 198.823 kb on + strand, within CA264_21650at 198.835 kb on + strand, within CA264_21650at 198.940 kb on + strand, within CA264_21650at 198.940 kb on + strand, within CA264_21650at 199.010 kb on - strand, within CA264_21650at 199.042 kb on + strand, within CA264_21650at 199.043 kb on - strand, within CA264_21650at 199.168 kb on - strand, within CA264_21650at 199.176 kb on + strand, within CA264_21650at 199.267 kb on - strand, within CA264_21650at 199.267 kb on - strand, within CA264_21650at 199.274 kb on - strand, within CA264_21650at 199.274 kb on - strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.276 kb on + strand, within CA264_21650at 199.277 kb on - strand, within CA264_21650at 199.277 kb on - strand, within CA264_21650at 199.278 kb on + strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.279 kb on - strand, within CA264_21650at 199.309 kb on + strand, within CA264_21650at 199.309 kb on + strand, within CA264_21650at 199.309 kb on + strand, within CA264_21650at 199.310 kb on - strand, within CA264_21650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
remove
196,712 + CA264_21640 0.63 +0.6
196,816 + CA264_21640 0.77 -0.6
196,888 + CA264_21640 0.86 +1.1
196,888 + CA264_21640 0.86 +0.3
196,889 - CA264_21640 0.86 +0.1
196,889 - CA264_21640 0.86 +1.5
196,954 - +0.5
196,954 - +0.4
197,030 - +1.0
197,043 + +0.2
197,043 + -0.8
197,055 + +0.1
197,093 - -0.0
197,150 + -0.1
197,152 + -2.4
197,152 + +0.5
197,152 + +0.0
197,186 + -2.0
197,186 + -0.7
197,187 - -0.7
197,188 + -0.3
197,206 + -0.3
197,211 - -1.4
197,213 + +0.2
197,222 - -0.6
197,250 + +0.5
197,250 + +1.2
197,251 - +1.1
197,251 - -1.1
197,286 - -0.3
197,286 - +0.0
197,288 + -1.0
197,289 - +0.2
197,335 + +0.4
197,335 + +0.4
197,350 + +0.7
197,350 + -1.3
197,351 - +0.4
197,351 - -0.7
197,351 - -0.4
197,353 + -0.2
197,380 + +0.2
197,380 + -0.3
197,381 - +0.1
197,381 - +0.0
197,381 - -0.6
197,382 + -1.1
197,382 + +0.2
197,383 - -0.2
197,383 - -0.4
197,487 + -1.3
197,487 + +0.5
197,487 + +0.3
197,488 - -0.9
197,523 + CA264_21645 0.10 -0.6
197,623 + CA264_21645 0.21 +0.5
197,637 + CA264_21645 0.23 +0.1
197,638 - CA264_21645 0.23 +1.1
197,652 + CA264_21645 0.25 +0.0
197,659 - CA264_21645 0.26 +1.5
197,663 - CA264_21645 0.26 -1.6
197,663 - CA264_21645 0.26 -0.3
197,663 - CA264_21645 0.26 -0.5
197,663 - CA264_21645 0.26 -0.1
197,666 - CA264_21645 0.26 +0.2
197,666 - CA264_21645 0.26 +0.1
197,667 + CA264_21645 0.26 -0.0
197,667 + CA264_21645 0.26 +0.1
197,667 + CA264_21645 0.26 +0.0
197,668 - CA264_21645 0.27 +0.8
197,668 - CA264_21645 0.27 -0.2
197,688 + CA264_21645 0.29 +0.4
197,722 + CA264_21645 0.33 +0.3
197,723 - CA264_21645 0.33 +0.3
197,769 - CA264_21645 0.38 +0.1
197,801 - CA264_21645 0.41 +0.1
197,854 - CA264_21645 0.47 -0.3
197,855 + CA264_21645 0.47 +0.2
197,856 - CA264_21645 0.48 +0.2
197,856 - CA264_21645 0.48 +0.7
197,856 - CA264_21645 0.48 +0.2
197,856 - CA264_21645 0.48 +0.6
197,860 - CA264_21645 0.48 +0.3
197,860 - CA264_21645 0.48 -0.1
197,891 - CA264_21645 0.51 -1.2
197,912 + CA264_21645 0.54 -0.1
197,913 - CA264_21645 0.54 +1.2
197,941 + CA264_21645 0.57 +0.4
197,958 + CA264_21645 0.59 +1.8
197,959 - CA264_21645 0.59 -0.0
197,986 + CA264_21645 0.62 +0.1
198,036 + CA264_21645 0.68 +0.7
198,036 + +2.2
198,037 - CA264_21645 0.68 -0.5
198,050 + CA264_21645 0.69 +0.3
198,051 - CA264_21645 0.69 +0.7
198,051 - CA264_21645 0.69 -0.6
198,060 - CA264_21645 0.70 -0.2
198,151 - CA264_21645 0.81 +0.2
198,202 + CA264_21645 0.86 -0.0
198,202 + CA264_21645 0.86 -0.1
198,206 + CA264_21645 0.87 -0.1
198,207 - CA264_21645 0.87 -0.4
198,235 - -0.2
198,324 + -1.0
198,325 - +0.9
198,328 + +0.3
198,329 - -0.0
198,329 - +0.3
198,329 - -0.1
198,335 + +0.1
198,345 + -0.9
198,345 + +1.1
198,346 - +0.2
198,367 + +0.4
198,367 + -0.7
198,367 + -0.2
198,368 + +0.0
198,368 - -0.4
198,371 + -1.3
198,383 + -0.3
198,388 + -0.4
198,388 + +0.1
198,389 - -1.0
198,420 - +0.2
198,433 + +0.2
198,434 - -0.6
198,437 - -0.8
198,439 + -0.9
198,466 + -0.6
198,579 + CA264_21650 0.16 +0.4
198,603 + CA264_21650 0.18 -0.2
198,627 + CA264_21650 0.20 -0.0
198,628 - CA264_21650 0.20 +0.6
198,679 + CA264_21650 0.23 +0.8
198,734 - CA264_21650 0.27 -0.4
198,734 - CA264_21650 0.27 -0.1
198,736 + CA264_21650 0.27 +0.7
198,736 + CA264_21650 0.27 -0.2
198,737 - CA264_21650 0.27 -0.8
198,740 - CA264_21650 0.27 -0.9
198,741 + CA264_21650 0.27 +0.5
198,741 + CA264_21650 0.27 +0.3
198,783 + CA264_21650 0.30 +0.2
198,823 + CA264_21650 0.33 +1.1
198,835 + CA264_21650 0.34 +0.5
198,940 + CA264_21650 0.41 +0.0
198,940 + CA264_21650 0.41 -0.7
199,010 - CA264_21650 0.45 -0.7
199,042 + CA264_21650 0.47 -0.2
199,043 - CA264_21650 0.47 +1.5
199,168 - CA264_21650 0.56 -0.2
199,176 + CA264_21650 0.56 -0.2
199,267 - CA264_21650 0.62 +0.2
199,267 - CA264_21650 0.62 -0.6
199,274 - CA264_21650 0.63 -0.0
199,274 - CA264_21650 0.63 +0.0
199,276 + CA264_21650 0.63 -0.1
199,276 + CA264_21650 0.63 +0.5
199,276 + CA264_21650 0.63 -0.1
199,276 + CA264_21650 0.63 -0.4
199,277 - CA264_21650 0.63 +0.1
199,277 - CA264_21650 0.63 -0.5
199,278 + CA264_21650 0.63 -0.9
199,279 - CA264_21650 0.63 +1.0
199,279 - CA264_21650 0.63 +0.3
199,279 - CA264_21650 0.63 -0.1
199,279 - CA264_21650 0.63 -0.0
199,309 + CA264_21650 0.65 -0.4
199,309 + CA264_21650 0.65 -0.3
199,309 + CA264_21650 0.65 -0.5
199,310 - CA264_21650 0.65 -1.5

Or see this region's nucleotide sequence