Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21430

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21425 and CA264_21430 are separated by 375 nucleotidesCA264_21430 and CA264_21435 are separated by 259 nucleotidesCA264_21435 and CA264_21440 are separated by 153 nucleotides CA264_21425: CA264_21425 - copper-translocating P-type ATPase, at 148,859 to 151,126 _21425 CA264_21430: CA264_21430 - DDE transposase, at 151,502 to 152,329 _21430 CA264_21435: CA264_21435 - hypothetical protein, at 152,589 to 152,876 _21435 CA264_21440: CA264_21440 - metal transporter, at 153,030 to 154,310 _21440 Position (kb) 151 152 153Strain fitness (log2 ratio) -2 -1 0 1at 150.519 kb on + strand, within CA264_21425at 150.519 kb on + strand, within CA264_21425at 150.520 kb on - strand, within CA264_21425at 150.520 kb on - strand, within CA264_21425at 150.572 kb on - strand, within CA264_21425at 150.602 kb on - strand, within CA264_21425at 150.611 kb on + strand, within CA264_21425at 150.685 kb on - strand, within CA264_21425at 150.776 kb on - strand, within CA264_21425at 150.934 kb on + strandat 150.934 kb on + strandat 150.935 kb on - strandat 150.935 kb on - strandat 150.936 kb on + strandat 150.936 kb on + strandat 151.001 kb on + strandat 151.043 kb on - strandat 151.048 kb on + strandat 151.081 kb on + strandat 151.099 kb on + strandat 151.100 kb on - strandat 151.112 kb on + strandat 151.112 kb on + strandat 151.113 kb on - strandat 151.117 kb on + strandat 151.186 kb on + strandat 151.190 kb on - strandat 151.227 kb on - strandat 151.227 kb on - strandat 151.236 kb on + strandat 151.243 kb on + strandat 151.244 kb on - strandat 151.258 kb on + strandat 151.309 kb on + strandat 151.323 kb on + strandat 151.323 kb on + strandat 151.324 kb on - strandat 151.324 kb on - strandat 151.328 kb on - strandat 151.332 kb on + strandat 151.375 kb on + strandat 151.388 kb on - strandat 151.409 kb on + strandat 151.409 kb on + strandat 151.415 kb on - strandat 151.434 kb on + strandat 151.495 kb on + strandat 151.527 kb on + strandat 151.527 kb on + strandat 151.528 kb on - strandat 151.528 kb on - strandat 151.528 kb on - strandat 151.532 kb on - strandat 151.600 kb on - strand, within CA264_21430at 151.603 kb on - strand, within CA264_21430at 151.616 kb on + strand, within CA264_21430at 151.617 kb on - strand, within CA264_21430at 151.618 kb on + strand, within CA264_21430at 151.618 kb on + strand, within CA264_21430at 151.618 kb on + strand, within CA264_21430at 151.619 kb on - strand, within CA264_21430at 151.619 kb on - strand, within CA264_21430at 151.619 kb on - strand, within CA264_21430at 151.624 kb on + strand, within CA264_21430at 151.624 kb on + strand, within CA264_21430at 151.624 kb on + strand, within CA264_21430at 151.700 kb on + strand, within CA264_21430at 151.701 kb on - strand, within CA264_21430at 151.704 kb on - strand, within CA264_21430at 151.783 kb on + strand, within CA264_21430at 151.798 kb on - strand, within CA264_21430at 151.811 kb on - strand, within CA264_21430at 151.909 kb on + strand, within CA264_21430at 152.094 kb on + strand, within CA264_21430at 152.144 kb on + strand, within CA264_21430at 152.144 kb on + strand, within CA264_21430at 152.150 kb on + strand, within CA264_21430at 152.151 kb on - strand, within CA264_21430at 152.151 kb on - strand, within CA264_21430at 152.184 kb on + strand, within CA264_21430at 152.188 kb on - strand, within CA264_21430at 152.341 kb on - strandat 152.341 kb on - strandat 152.341 kb on - strandat 152.373 kb on - strandat 152.377 kb on - strandat 152.377 kb on - strandat 152.394 kb on - strandat 152.399 kb on + strandat 152.425 kb on + strandat 152.441 kb on + strandat 152.441 kb on + strandat 152.447 kb on + strandat 152.526 kb on - strandat 152.526 kb on - strandat 152.526 kb on - strandat 152.637 kb on - strand, within CA264_21435at 152.693 kb on - strand, within CA264_21435at 153.115 kb on - strandat 153.310 kb on - strand, within CA264_21440

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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150,519 + CA264_21425 0.73 +0.1
150,519 + CA264_21425 0.73 -0.5
150,520 - CA264_21425 0.73 -0.4
150,520 - CA264_21425 0.73 -0.4
150,572 - CA264_21425 0.76 +0.2
150,602 - CA264_21425 0.77 -0.5
150,611 + CA264_21425 0.77 -0.3
150,685 - CA264_21425 0.81 -0.2
150,776 - CA264_21425 0.85 -0.3
150,934 + +0.7
150,934 + -0.1
150,935 - +0.7
150,935 - -0.9
150,936 + -1.6
150,936 + -1.4
151,001 + -0.6
151,043 - -0.7
151,048 + -0.4
151,081 + -1.4
151,099 + -0.4
151,100 - -0.5
151,112 + +0.8
151,112 + -0.3
151,113 - -0.5
151,117 + +0.4
151,186 + -0.6
151,190 - +1.0
151,227 - -0.6
151,227 - -0.1
151,236 + -0.0
151,243 + +0.3
151,244 - -0.1
151,258 + -0.6
151,309 + +0.1
151,323 + -0.5
151,323 + +0.1
151,324 - +0.5
151,324 - -0.0
151,328 - +0.0
151,332 + -0.5
151,375 + -0.5
151,388 - +1.5
151,409 + +0.3
151,409 + -0.7
151,415 - +0.3
151,434 + -0.1
151,495 + -0.3
151,527 + -0.2
151,527 + +1.0
151,528 - -0.0
151,528 - -1.1
151,528 - -0.3
151,532 - -0.1
151,600 - CA264_21430 0.12 +0.3
151,603 - CA264_21430 0.12 -0.9
151,616 + CA264_21430 0.14 -0.4
151,617 - CA264_21430 0.14 -0.5
151,618 + CA264_21430 0.14 -0.8
151,618 + CA264_21430 0.14 -0.4
151,618 + CA264_21430 0.14 +0.7
151,619 - CA264_21430 0.14 -1.2
151,619 - CA264_21430 0.14 +1.0
151,619 - CA264_21430 0.14 +0.5
151,624 + CA264_21430 0.15 +0.5
151,624 + CA264_21430 0.15 -0.1
151,624 + CA264_21430 0.15 -0.5
151,700 + CA264_21430 0.24 -0.5
151,701 - CA264_21430 0.24 -1.9
151,704 - CA264_21430 0.24 -0.8
151,783 + CA264_21430 0.34 -1.1
151,798 - CA264_21430 0.36 +1.4
151,811 - CA264_21430 0.37 -0.4
151,909 + CA264_21430 0.49 -0.2
152,094 + CA264_21430 0.71 -0.0
152,144 + CA264_21430 0.78 +0.0
152,144 + CA264_21430 0.78 +0.3
152,150 + CA264_21430 0.78 +0.7
152,151 - CA264_21430 0.78 -1.6
152,151 - CA264_21430 0.78 -0.9
152,184 + CA264_21430 0.82 -0.8
152,188 - CA264_21430 0.83 +0.2
152,341 - -0.1
152,341 - -0.1
152,341 - -0.4
152,373 - -1.5
152,377 - -0.4
152,377 - -0.1
152,394 - -0.5
152,399 + +0.0
152,425 + -1.5
152,441 + -0.9
152,441 + -0.1
152,447 + +0.4
152,526 - +0.1
152,526 - -0.1
152,526 - +0.0
152,637 - CA264_21435 0.17 -0.8
152,693 - CA264_21435 0.36 -2.4
153,115 - -0.5
153,310 - CA264_21440 0.22 -0.1

Or see this region's nucleotide sequence