Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19595 and CA264_19600 are separated by 109 nucleotides CA264_19600 and CA264_19605 are separated by 652 nucleotides
CA264_19595: CA264_19595 - deoxyribonuclease HsdR, at 4,526,331 to 4,527,821
_19595
CA264_19600: CA264_19600 - aldehyde dehydrogenase family protein, at 4,527,931 to 4,529,508
_19600
CA264_19605: CA264_19605 - RNA polymerase, at 4,530,161 to 4,530,718
_19605
Position (kb)
4527
4528
4529
4530 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4526.937 kb on - strand, within CA264_19595 at 4526.982 kb on - strand, within CA264_19595 at 4527.201 kb on + strand, within CA264_19595 at 4527.297 kb on + strand, within CA264_19595 at 4527.297 kb on + strand, within CA264_19595 at 4527.298 kb on - strand, within CA264_19595 at 4527.298 kb on - strand, within CA264_19595 at 4527.363 kb on - strand, within CA264_19595 at 4527.487 kb on + strand, within CA264_19595 at 4527.488 kb on - strand, within CA264_19595 at 4527.657 kb on - strand, within CA264_19595 at 4527.678 kb on - strand at 4527.678 kb on - strand at 4527.695 kb on + strand at 4527.699 kb on + strand at 4527.700 kb on - strand at 4527.700 kb on - strand at 4527.758 kb on - strand at 4527.762 kb on + strand at 4527.799 kb on - strand at 4527.891 kb on - strand at 4527.893 kb on - strand at 4527.893 kb on - strand at 4527.922 kb on + strand at 4527.922 kb on + strand at 4527.924 kb on + strand at 4528.007 kb on + strand at 4528.018 kb on + strand at 4528.065 kb on + strand at 4528.129 kb on + strand, within CA264_19600 at 4528.140 kb on - strand, within CA264_19600 at 4528.181 kb on + strand, within CA264_19600 at 4528.367 kb on - strand, within CA264_19600 at 4528.402 kb on + strand, within CA264_19600 at 4528.403 kb on - strand, within CA264_19600 at 4528.778 kb on + strand, within CA264_19600 at 4528.778 kb on + strand, within CA264_19600 at 4528.823 kb on + strand, within CA264_19600 at 4528.824 kb on - strand, within CA264_19600 at 4528.959 kb on + strand, within CA264_19600 at 4528.965 kb on + strand, within CA264_19600 at 4529.011 kb on - strand, within CA264_19600 at 4529.011 kb on - strand, within CA264_19600 at 4529.184 kb on + strand, within CA264_19600 at 4529.184 kb on + strand, within CA264_19600 at 4529.425 kb on + strand at 4529.510 kb on - strand at 4529.547 kb on + strand at 4529.547 kb on + strand at 4529.547 kb on + strand at 4529.548 kb on - strand at 4529.553 kb on + strand at 4529.554 kb on - strand at 4529.600 kb on - strand at 4529.609 kb on - strand at 4529.617 kb on - strand at 4529.668 kb on + strand at 4529.669 kb on - strand at 4529.699 kb on + strand at 4529.716 kb on - strand at 4529.716 kb on - strand at 4529.753 kb on + strand at 4529.753 kb on + strand at 4529.834 kb on + strand at 4530.002 kb on - strand at 4530.051 kb on + strand at 4530.082 kb on + strand at 4530.154 kb on + strand at 4530.186 kb on + strand at 4530.187 kb on - strand at 4530.245 kb on + strand, within CA264_19605 at 4530.246 kb on - strand, within CA264_19605 at 4530.254 kb on + strand, within CA264_19605 at 4530.254 kb on + strand, within CA264_19605 at 4530.254 kb on + strand, within CA264_19605 at 4530.265 kb on + strand, within CA264_19605 at 4530.266 kb on - strand, within CA264_19605 at 4530.299 kb on + strand, within CA264_19605 at 4530.362 kb on + strand, within CA264_19605 at 4530.363 kb on - strand, within CA264_19605 at 4530.363 kb on - strand, within CA264_19605 at 4530.419 kb on - strand, within CA264_19605
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 4,526,937 - CA264_19595 0.41 -0.7 4,526,982 - CA264_19595 0.44 -0.2 4,527,201 + CA264_19595 0.58 -0.9 4,527,297 + CA264_19595 0.65 -1.3 4,527,297 + CA264_19595 0.65 +0.0 4,527,298 - CA264_19595 0.65 -0.8 4,527,298 - CA264_19595 0.65 -2.6 4,527,363 - CA264_19595 0.69 -0.1 4,527,487 + CA264_19595 0.78 -0.8 4,527,488 - CA264_19595 0.78 -1.0 4,527,657 - CA264_19595 0.89 -0.5 4,527,678 - -1.9 4,527,678 - -0.1 4,527,695 + -0.9 4,527,699 + -1.0 4,527,700 - +0.2 4,527,700 - +0.6 4,527,758 - -0.2 4,527,762 + -0.5 4,527,799 - +1.1 4,527,891 - -0.3 4,527,893 - -0.9 4,527,893 - -0.4 4,527,922 + -0.4 4,527,922 + -0.4 4,527,924 + +1.0 4,528,007 + +0.2 4,528,018 + -0.2 4,528,065 + -1.2 4,528,129 + CA264_19600 0.13 +1.2 4,528,140 - CA264_19600 0.13 -0.9 4,528,181 + CA264_19600 0.16 +0.2 4,528,367 - CA264_19600 0.28 +0.1 4,528,402 + CA264_19600 0.30 -0.1 4,528,403 - CA264_19600 0.30 -1.4 4,528,778 + CA264_19600 0.54 +1.1 4,528,778 + CA264_19600 0.54 +0.5 4,528,823 + CA264_19600 0.57 -0.9 4,528,824 - CA264_19600 0.57 -0.8 4,528,959 + CA264_19600 0.65 -1.2 4,528,965 + CA264_19600 0.66 -0.6 4,529,011 - CA264_19600 0.68 -0.3 4,529,011 - CA264_19600 0.68 -0.3 4,529,184 + CA264_19600 0.79 -0.8 4,529,184 + CA264_19600 0.79 -0.5 4,529,425 + +0.1 4,529,510 - -0.2 4,529,547 + -0.2 4,529,547 + +1.5 4,529,547 + -1.3 4,529,548 - +0.9 4,529,553 + +0.6 4,529,554 - +0.0 4,529,600 - -0.2 4,529,609 - -0.3 4,529,617 - +0.4 4,529,668 + -0.1 4,529,669 - -0.1 4,529,699 + -0.3 4,529,716 - +2.5 4,529,716 - +0.7 4,529,753 + -0.7 4,529,753 + -0.8 4,529,834 + -0.9 4,530,002 - -0.4 4,530,051 + -0.8 4,530,082 + +2.1 4,530,154 + -0.4 4,530,186 + +0.3 4,530,187 - +0.1 4,530,245 + CA264_19605 0.15 -0.6 4,530,246 - CA264_19605 0.15 -1.4 4,530,254 + CA264_19605 0.17 -0.3 4,530,254 + CA264_19605 0.17 +0.2 4,530,254 + CA264_19605 0.17 +0.2 4,530,265 + CA264_19605 0.19 -0.4 4,530,266 - CA264_19605 0.19 +0.4 4,530,299 + CA264_19605 0.25 -0.3 4,530,362 + CA264_19605 0.36 -0.1 4,530,363 - CA264_19605 0.36 -0.4 4,530,363 - CA264_19605 0.36 +0.0 4,530,419 - CA264_19605 0.46 -0.2
Or see this region's nucleotide sequence