Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17875

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17865 and CA264_17870 are separated by 96 nucleotidesCA264_17870 and CA264_17875 are separated by 105 nucleotidesCA264_17875 and CA264_17880 are separated by 120 nucleotides CA264_17865: CA264_17865 - CPBP family intramembrane metalloprotease domain-containing protein, at 4,154,248 to 4,155,213 _17865 CA264_17870: CA264_17870 - phosphatidate cytidylyltransferase, at 4,155,310 to 4,156,095 _17870 CA264_17875: CA264_17875 - amino acid dehydrogenase, at 4,156,201 to 4,157,475 _17875 CA264_17880: CA264_17880 - phosphatidylserine decarboxylase, at 4,157,596 to 4,158,279 _17880 Position (kb) 4156 4157 4158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4155.211 kb on + strandat 4155.212 kb on - strandat 4155.223 kb on - strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.236 kb on - strandat 4156.125 kb on + strandat 4156.307 kb on + strandat 4156.308 kb on - strandat 4156.404 kb on - strand, within CA264_17875at 4156.565 kb on - strand, within CA264_17875at 4156.627 kb on - strand, within CA264_17875at 4156.650 kb on - strand, within CA264_17875at 4157.094 kb on - strand, within CA264_17875at 4157.192 kb on - strand, within CA264_17875at 4157.275 kb on + strand, within CA264_17875at 4157.474 kb on - strandat 4157.526 kb on + strandat 4157.538 kb on + strandat 4157.567 kb on + strandat 4158.277 kb on + strandat 4158.293 kb on - strandat 4158.293 kb on - strandat 4158.294 kb on + strandat 4158.294 kb on + strandat 4158.295 kb on - strandat 4158.300 kb on - strandat 4158.303 kb on + strandat 4158.303 kb on + strandat 4158.303 kb on + strandat 4158.304 kb on - strandat 4158.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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4,155,211 + +1.3
4,155,212 - -1.8
4,155,223 - -0.3
4,155,233 + -0.3
4,155,233 + +0.5
4,155,233 + -0.7
4,155,233 + +1.0
4,155,236 - -2.9
4,156,125 + +0.4
4,156,307 + +0.2
4,156,308 - +0.3
4,156,404 - CA264_17875 0.16 -0.8
4,156,565 - CA264_17875 0.29 +0.5
4,156,627 - CA264_17875 0.33 +0.4
4,156,650 - CA264_17875 0.35 -0.8
4,157,094 - CA264_17875 0.70 +0.1
4,157,192 - CA264_17875 0.78 -0.8
4,157,275 + CA264_17875 0.84 +0.0
4,157,474 - +0.1
4,157,526 + +1.8
4,157,538 + -0.1
4,157,567 + -0.6
4,158,277 + -0.2
4,158,293 - -0.7
4,158,293 - -0.8
4,158,294 + -1.0
4,158,294 + -0.2
4,158,295 - -0.4
4,158,300 - -1.5
4,158,303 + +0.4
4,158,303 + -1.8
4,158,303 + -0.2
4,158,304 - -0.5
4,158,402 - +1.5

Or see this region's nucleotide sequence