Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17710 and CA264_17715 are separated by 242 nucleotides CA264_17715 and CA264_17720 are separated by 66 nucleotides
CA264_17710: CA264_17710 - hypothetical protein, at 4,121,077 to 4,121,814
_17710
CA264_17715: CA264_17715 - hypothetical protein, at 4,122,057 to 4,122,557
_17715
CA264_17720: CA264_17720 - beta-ketoadipyl CoA thiolase, at 4,122,624 to 4,123,823
_17720
Position (kb)
4122
4123 Strain fitness (log2 ratio)
-1
0
1
2 at 4121.068 kb on - strand at 4121.090 kb on + strand at 4121.090 kb on + strand at 4121.091 kb on - strand at 4121.091 kb on - strand at 4121.093 kb on + strand at 4121.144 kb on + strand at 4121.145 kb on - strand at 4121.149 kb on - strand at 4121.149 kb on - strand at 4121.184 kb on - strand, within CA264_17710 at 4121.189 kb on + strand, within CA264_17710 at 4121.190 kb on - strand, within CA264_17710 at 4121.220 kb on + strand, within CA264_17710 at 4121.221 kb on - strand, within CA264_17710 at 4121.224 kb on + strand, within CA264_17710 at 4121.224 kb on + strand, within CA264_17710 at 4121.225 kb on - strand, within CA264_17710 at 4121.235 kb on - strand, within CA264_17710 at 4121.239 kb on - strand, within CA264_17710 at 4121.260 kb on + strand, within CA264_17710 at 4121.297 kb on - strand, within CA264_17710 at 4121.297 kb on - strand, within CA264_17710 at 4121.298 kb on + strand, within CA264_17710 at 4121.299 kb on - strand, within CA264_17710 at 4121.316 kb on - strand, within CA264_17710 at 4121.381 kb on - strand, within CA264_17710 at 4121.458 kb on + strand, within CA264_17710 at 4121.459 kb on - strand, within CA264_17710 at 4121.459 kb on - strand, within CA264_17710 at 4121.476 kb on + strand, within CA264_17710 at 4121.476 kb on + strand, within CA264_17710 at 4121.704 kb on + strand, within CA264_17710 at 4121.704 kb on + strand, within CA264_17710 at 4121.705 kb on - strand, within CA264_17710 at 4121.710 kb on + strand, within CA264_17710 at 4121.711 kb on - strand, within CA264_17710 at 4121.716 kb on + strand, within CA264_17710 at 4121.716 kb on + strand, within CA264_17710 at 4121.717 kb on - strand, within CA264_17710 at 4121.744 kb on - strand at 4121.744 kb on - strand at 4121.750 kb on - strand at 4121.883 kb on + strand at 4121.888 kb on + strand at 4121.981 kb on - strand at 4122.021 kb on + strand at 4122.552 kb on + strand at 4122.557 kb on + strand at 4122.557 kb on + strand at 4122.557 kb on + strand at 4122.558 kb on - strand at 4122.558 kb on - strand at 4122.572 kb on - strand at 4122.582 kb on - strand at 4122.595 kb on - strand at 4122.629 kb on + strand at 4122.629 kb on + strand at 4122.629 kb on + strand at 4122.636 kb on + strand at 4122.636 kb on + strand at 4122.636 kb on + strand at 4122.637 kb on - strand at 4122.639 kb on - strand at 4122.639 kb on - strand at 4122.640 kb on + strand at 4122.640 kb on + strand at 4122.641 kb on - strand at 4122.641 kb on - strand at 4122.648 kb on - strand at 4122.649 kb on + strand at 4122.649 kb on + strand at 4122.650 kb on - strand at 4122.653 kb on + strand at 4122.653 kb on + strand at 4122.653 kb on + strand at 4122.654 kb on - strand at 4122.654 kb on - strand at 4122.823 kb on + strand, within CA264_17720 at 4122.824 kb on - strand, within CA264_17720 at 4122.875 kb on + strand, within CA264_17720 at 4122.911 kb on + strand, within CA264_17720 at 4122.911 kb on + strand, within CA264_17720 at 4122.932 kb on + strand, within CA264_17720 at 4122.955 kb on + strand, within CA264_17720 at 4122.956 kb on - strand, within CA264_17720 at 4122.957 kb on + strand, within CA264_17720 at 4122.981 kb on - strand, within CA264_17720 at 4123.023 kb on + strand, within CA264_17720 at 4123.045 kb on - strand, within CA264_17720 at 4123.071 kb on - strand, within CA264_17720 at 4123.080 kb on - strand, within CA264_17720 at 4123.089 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.193 kb on - strand, within CA264_17720 at 4123.197 kb on + strand, within CA264_17720 at 4123.197 kb on + strand, within CA264_17720 at 4123.388 kb on - strand, within CA264_17720 at 4123.443 kb on - strand, within CA264_17720 at 4123.443 kb on - strand, within CA264_17720 at 4123.490 kb on - strand, within CA264_17720 at 4123.555 kb on + strand, within CA264_17720 at 4123.556 kb on - strand, within CA264_17720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 4,121,068 - -0.2 4,121,090 + -0.1 4,121,090 + +0.5 4,121,091 - +1.3 4,121,091 - -0.5 4,121,093 + -0.6 4,121,144 + +0.5 4,121,145 - +0.0 4,121,149 - -0.2 4,121,149 - +0.1 4,121,184 - CA264_17710 0.14 +0.0 4,121,189 + CA264_17710 0.15 -0.0 4,121,190 - CA264_17710 0.15 -1.4 4,121,220 + CA264_17710 0.19 -1.1 4,121,221 - CA264_17710 0.20 +0.2 4,121,224 + CA264_17710 0.20 -0.9 4,121,224 + CA264_17710 0.20 +0.0 4,121,225 - CA264_17710 0.20 -1.3 4,121,235 - CA264_17710 0.21 +0.4 4,121,239 - CA264_17710 0.22 +0.1 4,121,260 + CA264_17710 0.25 +0.5 4,121,297 - CA264_17710 0.30 -1.0 4,121,297 - CA264_17710 0.30 -0.4 4,121,298 + CA264_17710 0.30 +0.1 4,121,299 - CA264_17710 0.30 -0.7 4,121,316 - CA264_17710 0.32 -0.1 4,121,381 - CA264_17710 0.41 -0.2 4,121,458 + CA264_17710 0.52 +0.5 4,121,459 - CA264_17710 0.52 -0.2 4,121,459 - CA264_17710 0.52 -1.1 4,121,476 + CA264_17710 0.54 -0.5 4,121,476 + CA264_17710 0.54 -0.8 4,121,704 + CA264_17710 0.85 +0.0 4,121,704 + CA264_17710 0.85 -0.5 4,121,705 - CA264_17710 0.85 -0.2 4,121,710 + CA264_17710 0.86 -0.6 4,121,711 - CA264_17710 0.86 +0.8 4,121,716 + CA264_17710 0.87 -0.0 4,121,716 + CA264_17710 0.87 +1.0 4,121,717 - CA264_17710 0.87 -1.3 4,121,744 - -0.3 4,121,744 - -0.1 4,121,750 - +0.5 4,121,883 + -0.2 4,121,888 + -0.3 4,121,981 - +1.6 4,122,021 + -0.2 4,122,552 + +0.7 4,122,557 + +0.3 4,122,557 + +0.7 4,122,557 + +0.5 4,122,558 - +0.6 4,122,558 - -0.1 4,122,572 - +0.2 4,122,582 - -0.2 4,122,595 - -0.3 4,122,629 + -0.3 4,122,629 + -0.1 4,122,629 + +0.1 4,122,636 + -1.1 4,122,636 + +0.3 4,122,636 + -0.3 4,122,637 - +0.0 4,122,639 - -0.4 4,122,639 - +1.0 4,122,640 + +2.0 4,122,640 + +0.1 4,122,641 - -0.1 4,122,641 - +0.5 4,122,648 - -0.2 4,122,649 + +0.3 4,122,649 + +1.4 4,122,650 - +0.4 4,122,653 + +0.3 4,122,653 + +0.7 4,122,653 + -0.1 4,122,654 - +0.5 4,122,654 - -0.2 4,122,823 + CA264_17720 0.17 -1.0 4,122,824 - CA264_17720 0.17 -0.5 4,122,875 + CA264_17720 0.21 -0.4 4,122,911 + CA264_17720 0.24 -1.0 4,122,911 + CA264_17720 0.24 +0.0 4,122,932 + CA264_17720 0.26 +0.5 4,122,955 + CA264_17720 0.28 -0.0 4,122,956 - CA264_17720 0.28 +0.4 4,122,957 + CA264_17720 0.28 +0.2 4,122,981 - CA264_17720 0.30 +0.6 4,123,023 + CA264_17720 0.33 +0.8 4,123,045 - CA264_17720 0.35 +0.4 4,123,071 - CA264_17720 0.37 +0.6 4,123,080 - CA264_17720 0.38 -1.2 4,123,089 - CA264_17720 0.39 +0.3 4,123,182 - CA264_17720 0.47 +0.2 4,123,182 - CA264_17720 0.47 -1.0 4,123,182 - CA264_17720 0.47 +0.9 4,123,193 - CA264_17720 0.47 -0.4 4,123,197 + CA264_17720 0.48 -0.1 4,123,197 + CA264_17720 0.48 +0.7 4,123,388 - CA264_17720 0.64 +0.6 4,123,443 - CA264_17720 0.68 +0.4 4,123,443 - CA264_17720 0.68 -0.1 4,123,490 - CA264_17720 0.72 -0.4 4,123,555 + CA264_17720 0.78 +1.2 4,123,556 - CA264_17720 0.78 -0.3
Or see this region's nucleotide sequence