Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17540 and CA264_17545 are separated by 248 nucleotides CA264_17545 and CA264_17550 are separated by 129 nucleotides
CA264_17540: CA264_17540 - hypothetical protein, at 4,086,431 to 4,088,248
_17540
CA264_17545: CA264_17545 - single-stranded-DNA-specific exonuclease RecJ, at 4,088,497 to 4,090,203
_17545
CA264_17550: CA264_17550 - lysozyme, at 4,090,333 to 4,091,157
_17550
Position (kb)
4088
4089
4090
4091 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4087.502 kb on + strand, within CA264_17540 at 4087.611 kb on - strand, within CA264_17540 at 4087.728 kb on - strand, within CA264_17540 at 4087.728 kb on - strand, within CA264_17540 at 4087.730 kb on - strand, within CA264_17540 at 4087.730 kb on - strand, within CA264_17540 at 4087.907 kb on - strand, within CA264_17540 at 4087.982 kb on + strand, within CA264_17540 at 4088.111 kb on - strand at 4088.156 kb on + strand at 4088.276 kb on + strand at 4088.277 kb on - strand at 4088.277 kb on - strand at 4088.277 kb on - strand at 4088.278 kb on + strand at 4088.279 kb on - strand at 4088.308 kb on + strand at 4088.308 kb on + strand at 4088.308 kb on + strand at 4088.309 kb on - strand at 4088.309 kb on - strand at 4088.333 kb on - strand at 4088.379 kb on - strand at 4088.380 kb on + strand at 4088.451 kb on + strand at 4088.480 kb on + strand at 4088.480 kb on + strand at 4088.480 kb on + strand at 4088.480 kb on + strand at 4088.480 kb on + strand at 4088.482 kb on + strand at 4088.482 kb on + strand at 4088.482 kb on + strand at 4088.483 kb on - strand at 4088.483 kb on - strand at 4088.490 kb on + strand at 4088.514 kb on - strand at 4088.578 kb on - strand at 4088.578 kb on - strand at 4088.792 kb on - strand, within CA264_17545 at 4088.809 kb on + strand, within CA264_17545 at 4088.809 kb on + strand, within CA264_17545 at 4088.810 kb on - strand, within CA264_17545 at 4088.810 kb on - strand, within CA264_17545 at 4088.811 kb on + strand, within CA264_17545 at 4088.812 kb on - strand, within CA264_17545 at 4088.830 kb on + strand, within CA264_17545 at 4088.879 kb on + strand, within CA264_17545 at 4088.880 kb on - strand, within CA264_17545 at 4088.880 kb on - strand, within CA264_17545 at 4088.913 kb on + strand, within CA264_17545 at 4088.915 kb on + strand, within CA264_17545 at 4088.957 kb on - strand, within CA264_17545 at 4089.071 kb on - strand, within CA264_17545 at 4089.123 kb on + strand, within CA264_17545 at 4089.124 kb on - strand, within CA264_17545 at 4089.125 kb on + strand, within CA264_17545 at 4089.125 kb on + strand, within CA264_17545 at 4089.126 kb on - strand, within CA264_17545 at 4089.132 kb on + strand, within CA264_17545 at 4089.155 kb on - strand, within CA264_17545 at 4089.155 kb on - strand, within CA264_17545 at 4089.155 kb on - strand, within CA264_17545 at 4089.195 kb on + strand, within CA264_17545 at 4089.281 kb on + strand, within CA264_17545 at 4089.282 kb on - strand, within CA264_17545 at 4089.282 kb on - strand, within CA264_17545 at 4089.357 kb on + strand, within CA264_17545 at 4089.358 kb on - strand, within CA264_17545 at 4089.435 kb on + strand, within CA264_17545 at 4089.462 kb on + strand, within CA264_17545 at 4089.753 kb on + strand, within CA264_17545 at 4089.754 kb on - strand, within CA264_17545 at 4089.754 kb on - strand, within CA264_17545 at 4089.754 kb on - strand, within CA264_17545 at 4089.754 kb on - strand, within CA264_17545 at 4089.754 kb on - strand, within CA264_17545 at 4089.754 kb on - strand, within CA264_17545 at 4089.754 kb on - strand, within CA264_17545 at 4089.757 kb on + strand, within CA264_17545 at 4089.757 kb on + strand, within CA264_17545 at 4089.758 kb on - strand, within CA264_17545 at 4089.758 kb on - strand, within CA264_17545 at 4089.758 kb on - strand, within CA264_17545 at 4089.758 kb on - strand, within CA264_17545 at 4089.771 kb on + strand, within CA264_17545 at 4089.782 kb on + strand, within CA264_17545 at 4089.803 kb on + strand, within CA264_17545 at 4089.804 kb on - strand, within CA264_17545 at 4089.832 kb on - strand, within CA264_17545 at 4089.887 kb on + strand, within CA264_17545 at 4089.897 kb on + strand, within CA264_17545 at 4089.983 kb on - strand, within CA264_17545 at 4089.998 kb on + strand, within CA264_17545 at 4089.998 kb on + strand, within CA264_17545 at 4089.998 kb on + strand, within CA264_17545 at 4090.091 kb on - strand at 4090.101 kb on - strand at 4090.131 kb on + strand at 4090.132 kb on - strand at 4090.151 kb on - strand at 4090.161 kb on - strand at 4090.218 kb on - strand at 4090.247 kb on - strand at 4090.262 kb on + strand at 4090.284 kb on + strand at 4090.285 kb on - strand at 4090.312 kb on - strand at 4090.357 kb on + strand at 4090.358 kb on - strand at 4090.419 kb on + strand, within CA264_17550 at 4090.420 kb on - strand, within CA264_17550 at 4090.420 kb on - strand, within CA264_17550 at 4090.449 kb on + strand, within CA264_17550 at 4090.450 kb on - strand, within CA264_17550 at 4090.450 kb on - strand, within CA264_17550 at 4090.496 kb on + strand, within CA264_17550 at 4090.529 kb on - strand, within CA264_17550 at 4090.572 kb on - strand, within CA264_17550 at 4090.622 kb on + strand, within CA264_17550 at 4090.702 kb on + strand, within CA264_17550 at 4090.814 kb on + strand, within CA264_17550 at 4090.814 kb on + strand, within CA264_17550 at 4090.815 kb on - strand, within CA264_17550 at 4091.053 kb on - strand, within CA264_17550 at 4091.053 kb on - strand, within CA264_17550 at 4091.053 kb on - strand, within CA264_17550 at 4091.158 kb on - strand at 4091.158 kb on - strand at 4091.171 kb on - strand at 4091.171 kb on - strand at 4091.175 kb on + strand at 4091.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 4,087,502 + CA264_17540 0.59 +0.5 4,087,611 - CA264_17540 0.65 -0.1 4,087,728 - CA264_17540 0.71 +1.0 4,087,728 - CA264_17540 0.71 -1.0 4,087,730 - CA264_17540 0.71 -0.1 4,087,730 - CA264_17540 0.71 -1.0 4,087,907 - CA264_17540 0.81 -0.4 4,087,982 + CA264_17540 0.85 -0.4 4,088,111 - -1.5 4,088,156 + +0.2 4,088,276 + -0.6 4,088,277 - +0.1 4,088,277 - -0.3 4,088,277 - +0.3 4,088,278 + -0.2 4,088,279 - -0.3 4,088,308 + +0.1 4,088,308 + -0.0 4,088,308 + -0.5 4,088,309 - -0.9 4,088,309 - +0.6 4,088,333 - -0.3 4,088,379 - -0.6 4,088,380 + -1.9 4,088,451 + -0.7 4,088,480 + +0.6 4,088,480 + +0.4 4,088,480 + -1.4 4,088,480 + +0.1 4,088,480 + +0.5 4,088,482 + -0.3 4,088,482 + -0.2 4,088,482 + +0.1 4,088,483 - +0.7 4,088,483 - +1.9 4,088,490 + -0.7 4,088,514 - -0.5 4,088,578 - -0.7 4,088,578 - -0.2 4,088,792 - CA264_17545 0.17 -0.3 4,088,809 + CA264_17545 0.18 -0.3 4,088,809 + CA264_17545 0.18 +0.3 4,088,810 - CA264_17545 0.18 +0.2 4,088,810 - CA264_17545 0.18 +0.5 4,088,811 + CA264_17545 0.18 +0.6 4,088,812 - CA264_17545 0.18 +0.0 4,088,830 + CA264_17545 0.20 -2.4 4,088,879 + CA264_17545 0.22 +0.4 4,088,880 - CA264_17545 0.22 +0.0 4,088,880 - CA264_17545 0.22 -0.3 4,088,913 + CA264_17545 0.24 +0.0 4,088,915 + CA264_17545 0.24 -0.2 4,088,957 - CA264_17545 0.27 -0.1 4,089,071 - CA264_17545 0.34 +0.4 4,089,123 + CA264_17545 0.37 +0.8 4,089,124 - CA264_17545 0.37 +0.0 4,089,125 + CA264_17545 0.37 +0.0 4,089,125 + CA264_17545 0.37 +1.4 4,089,126 - CA264_17545 0.37 +0.2 4,089,132 + CA264_17545 0.37 +0.1 4,089,155 - CA264_17545 0.39 +0.5 4,089,155 - CA264_17545 0.39 -0.2 4,089,155 - CA264_17545 0.39 -0.0 4,089,195 + CA264_17545 0.41 -0.8 4,089,281 + CA264_17545 0.46 -0.4 4,089,282 - CA264_17545 0.46 -0.8 4,089,282 - CA264_17545 0.46 +0.5 4,089,357 + CA264_17545 0.50 -0.5 4,089,358 - CA264_17545 0.50 -0.3 4,089,435 + CA264_17545 0.55 +0.2 4,089,462 + CA264_17545 0.57 -0.6 4,089,753 + CA264_17545 0.74 +0.6 4,089,754 - CA264_17545 0.74 -0.8 4,089,754 - CA264_17545 0.74 +0.0 4,089,754 - CA264_17545 0.74 -0.8 4,089,754 - CA264_17545 0.74 -1.1 4,089,754 - CA264_17545 0.74 -0.0 4,089,754 - CA264_17545 0.74 +0.3 4,089,754 - CA264_17545 0.74 -0.3 4,089,757 + CA264_17545 0.74 +1.0 4,089,757 + CA264_17545 0.74 +0.7 4,089,758 - CA264_17545 0.74 -0.3 4,089,758 - CA264_17545 0.74 +1.2 4,089,758 - CA264_17545 0.74 +0.0 4,089,758 - CA264_17545 0.74 +1.6 4,089,771 + CA264_17545 0.75 +0.1 4,089,782 + CA264_17545 0.75 -0.5 4,089,803 + CA264_17545 0.77 -0.2 4,089,804 - CA264_17545 0.77 +0.2 4,089,832 - CA264_17545 0.78 +0.9 4,089,887 + CA264_17545 0.81 -0.3 4,089,897 + CA264_17545 0.82 -0.7 4,089,983 - CA264_17545 0.87 +0.4 4,089,998 + CA264_17545 0.88 -0.4 4,089,998 + CA264_17545 0.88 +0.3 4,089,998 + CA264_17545 0.88 +0.2 4,090,091 - -0.8 4,090,101 - -0.1 4,090,131 + +0.2 4,090,132 - -0.1 4,090,151 - +0.0 4,090,161 - -0.1 4,090,218 - +1.0 4,090,247 - +0.6 4,090,262 + -0.5 4,090,284 + +1.0 4,090,285 - -0.5 4,090,312 - -1.0 4,090,357 + -0.1 4,090,358 - -0.7 4,090,419 + CA264_17550 0.10 -0.9 4,090,420 - CA264_17550 0.11 +1.6 4,090,420 - CA264_17550 0.11 +0.7 4,090,449 + CA264_17550 0.14 -2.0 4,090,450 - CA264_17550 0.14 -0.3 4,090,450 - CA264_17550 0.14 -0.2 4,090,496 + CA264_17550 0.20 -1.0 4,090,529 - CA264_17550 0.24 +0.1 4,090,572 - CA264_17550 0.29 -0.1 4,090,622 + CA264_17550 0.35 -0.1 4,090,702 + CA264_17550 0.45 -0.0 4,090,814 + CA264_17550 0.58 -0.2 4,090,814 + CA264_17550 0.58 -0.1 4,090,815 - CA264_17550 0.58 -0.4 4,091,053 - CA264_17550 0.87 -0.3 4,091,053 - CA264_17550 0.87 -0.2 4,091,053 - CA264_17550 0.87 +0.2 4,091,158 - -1.3 4,091,158 - -0.4 4,091,171 - -1.0 4,091,171 - +1.1 4,091,175 + -0.4 4,091,193 - +0.5
Or see this region's nucleotide sequence