Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17505

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17495 and CA264_17500 are separated by 360 nucleotidesCA264_17500 and CA264_17505 are separated by 12 nucleotidesCA264_17505 and CA264_17510 are separated by 99 nucleotides CA264_17495: CA264_17495 - hypothetical protein, at 4,076,265 to 4,076,855 _17495 CA264_17500: CA264_17500 - molecular chaperone DnaK, at 4,077,216 to 4,077,605 _17500 CA264_17505: CA264_17505 - SMC-Scp complex subunit ScpB, at 4,077,618 to 4,078,181 _17505 CA264_17510: CA264_17510 - pseudouridylate synthase, at 4,078,281 to 4,079,909 _17510 Position (kb) 4077 4078 4079Strain fitness (log2 ratio) -2 -1 0 1 2at 4076.639 kb on + strand, within CA264_17495at 4076.639 kb on + strand, within CA264_17495at 4076.640 kb on - strand, within CA264_17495at 4076.640 kb on - strand, within CA264_17495at 4076.641 kb on + strand, within CA264_17495at 4076.642 kb on - strand, within CA264_17495at 4076.642 kb on - strand, within CA264_17495at 4076.838 kb on + strandat 4076.855 kb on + strandat 4076.867 kb on - strandat 4076.873 kb on + strandat 4076.878 kb on - strandat 4076.917 kb on + strandat 4076.954 kb on - strandat 4076.961 kb on - strandat 4076.961 kb on - strandat 4076.989 kb on - strandat 4077.002 kb on - strandat 4077.067 kb on + strandat 4077.103 kb on - strandat 4077.107 kb on + strandat 4077.108 kb on - strandat 4077.112 kb on - strandat 4077.112 kb on - strandat 4077.112 kb on - strandat 4077.127 kb on + strandat 4077.188 kb on - strandat 4077.204 kb on + strandat 4077.204 kb on + strandat 4077.205 kb on - strandat 4077.208 kb on - strandat 4077.214 kb on + strandat 4077.215 kb on - strandat 4077.215 kb on - strandat 4077.215 kb on - strandat 4077.221 kb on + strandat 4077.314 kb on - strand, within CA264_17500at 4077.502 kb on - strand, within CA264_17500at 4077.517 kb on + strand, within CA264_17500at 4077.596 kb on + strandat 4077.860 kb on - strand, within CA264_17505at 4077.860 kb on - strand, within CA264_17505at 4077.926 kb on + strand, within CA264_17505at 4078.031 kb on - strand, within CA264_17505at 4078.208 kb on - strandat 4078.209 kb on + strandat 4078.210 kb on - strandat 4078.230 kb on + strandat 4078.231 kb on - strandat 4078.272 kb on + strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.273 kb on - strandat 4078.276 kb on + strandat 4078.276 kb on + strandat 4078.277 kb on - strandat 4078.277 kb on - strandat 4078.277 kb on - strandat 4078.472 kb on + strand, within CA264_17510at 4078.473 kb on - strand, within CA264_17510at 4078.482 kb on - strand, within CA264_17510at 4078.942 kb on - strand, within CA264_17510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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4,076,639 + CA264_17495 0.63 -0.3
4,076,639 + CA264_17495 0.63 +0.0
4,076,640 - CA264_17495 0.63 -1.4
4,076,640 - CA264_17495 0.63 -1.3
4,076,641 + CA264_17495 0.64 -1.0
4,076,642 - CA264_17495 0.64 -0.7
4,076,642 - CA264_17495 0.64 -0.5
4,076,838 + -0.9
4,076,855 + -0.8
4,076,867 - -0.5
4,076,873 + +0.3
4,076,878 - -1.0
4,076,917 + +0.9
4,076,954 - -0.2
4,076,961 - +0.4
4,076,961 - -1.0
4,076,989 - -1.1
4,077,002 - +0.2
4,077,067 + -1.3
4,077,103 - +0.5
4,077,107 + -0.3
4,077,108 - +0.6
4,077,112 - -0.9
4,077,112 - +0.4
4,077,112 - +0.3
4,077,127 + +1.0
4,077,188 - +0.3
4,077,204 + -0.8
4,077,204 + -0.5
4,077,205 - -1.1
4,077,208 - +0.8
4,077,214 + -0.0
4,077,215 - +0.3
4,077,215 - +0.2
4,077,215 - -0.6
4,077,221 + -0.2
4,077,314 - CA264_17500 0.25 -0.1
4,077,502 - CA264_17500 0.73 -0.3
4,077,517 + CA264_17500 0.77 -0.1
4,077,596 + +1.4
4,077,860 - CA264_17505 0.43 -0.0
4,077,860 - CA264_17505 0.43 +0.2
4,077,926 + CA264_17505 0.55 -0.4
4,078,031 - CA264_17505 0.73 +2.4
4,078,208 - -1.1
4,078,209 + -0.5
4,078,210 - +0.8
4,078,230 + +0.3
4,078,231 - -0.3
4,078,272 + -2.1
4,078,273 - -0.5
4,078,273 - -0.3
4,078,273 - +0.3
4,078,273 - +1.4
4,078,273 - +0.8
4,078,276 + -0.5
4,078,276 + -0.1
4,078,277 - -0.4
4,078,277 - +0.8
4,078,277 - +0.4
4,078,472 + CA264_17510 0.12 -2.2
4,078,473 - CA264_17510 0.12 +0.5
4,078,482 - CA264_17510 0.12 -1.4
4,078,942 - CA264_17510 0.41 -0.0

Or see this region's nucleotide sequence