Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17470

Experiment: m.b. Cobalt chloride 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_17460 and CA264_17465 are separated by 273 nucleotidesCA264_17465 and CA264_17470 are separated by 104 nucleotidesCA264_17470 and CA264_17475 are separated by 33 nucleotides CA264_17460: CA264_17460 - hypothetical protein, at 4,069,460 to 4,070,974 _17460 CA264_17465: CA264_17465 - hypothetical protein, at 4,071,248 to 4,071,571 _17465 CA264_17470: CA264_17470 - hypothetical protein, at 4,071,676 to 4,072,308 _17470 CA264_17475: CA264_17475 - DNA replication and repair protein RecF, at 4,072,342 to 4,073,454 _17475 Position (kb) 4071 4072 4073Strain fitness (log2 ratio) -2 -1 0 1 2at 4070.769 kb on + strand, within CA264_17460at 4070.774 kb on - strand, within CA264_17460at 4070.774 kb on - strand, within CA264_17460at 4070.846 kb on - strandat 4070.922 kb on + strandat 4070.957 kb on - strandat 4070.957 kb on - strandat 4070.961 kb on - strandat 4071.017 kb on + strandat 4071.018 kb on - strandat 4071.018 kb on - strandat 4071.027 kb on + strandat 4071.027 kb on + strandat 4071.142 kb on + strandat 4071.184 kb on - strandat 4071.184 kb on - strandat 4071.196 kb on + strandat 4071.197 kb on - strandat 4071.585 kb on - strandat 4071.585 kb on - strandat 4071.617 kb on + strandat 4071.619 kb on + strandat 4071.641 kb on - strandat 4071.645 kb on + strandat 4071.645 kb on + strandat 4071.645 kb on + strandat 4071.645 kb on + strandat 4071.646 kb on - strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.651 kb on - strandat 4071.651 kb on - strandat 4071.651 kb on - strandat 4071.651 kb on - strandat 4071.714 kb on + strandat 4071.714 kb on + strandat 4071.715 kb on - strandat 4071.727 kb on + strandat 4071.727 kb on + strandat 4071.727 kb on + strandat 4071.735 kb on + strandat 4071.751 kb on + strand, within CA264_17470at 4071.751 kb on + strand, within CA264_17470at 4071.752 kb on - strand, within CA264_17470at 4071.818 kb on - strand, within CA264_17470at 4071.820 kb on - strand, within CA264_17470at 4071.820 kb on - strand, within CA264_17470at 4071.820 kb on - strand, within CA264_17470at 4071.862 kb on - strand, within CA264_17470at 4071.874 kb on + strand, within CA264_17470at 4071.874 kb on + strand, within CA264_17470at 4071.875 kb on - strand, within CA264_17470at 4071.875 kb on - strand, within CA264_17470at 4071.880 kb on + strand, within CA264_17470at 4071.902 kb on + strand, within CA264_17470at 4071.931 kb on - strand, within CA264_17470at 4071.944 kb on - strand, within CA264_17470at 4071.944 kb on - strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.993 kb on + strand, within CA264_17470at 4071.993 kb on + strand, within CA264_17470at 4071.994 kb on - strand, within CA264_17470at 4072.009 kb on + strand, within CA264_17470at 4072.039 kb on - strand, within CA264_17470at 4072.042 kb on + strand, within CA264_17470at 4072.043 kb on - strand, within CA264_17470at 4072.043 kb on - strand, within CA264_17470at 4072.043 kb on - strand, within CA264_17470at 4072.065 kb on + strand, within CA264_17470at 4072.066 kb on - strand, within CA264_17470at 4072.090 kb on + strand, within CA264_17470at 4072.090 kb on + strand, within CA264_17470at 4072.091 kb on - strand, within CA264_17470at 4072.147 kb on + strand, within CA264_17470at 4072.147 kb on + strand, within CA264_17470at 4072.147 kb on + strand, within CA264_17470at 4072.147 kb on + strand, within CA264_17470at 4072.148 kb on - strand, within CA264_17470at 4072.148 kb on - strand, within CA264_17470at 4072.149 kb on + strand, within CA264_17470at 4072.150 kb on - strand, within CA264_17470at 4072.156 kb on + strand, within CA264_17470at 4072.186 kb on + strand, within CA264_17470at 4072.199 kb on + strand, within CA264_17470at 4072.203 kb on + strand, within CA264_17470at 4072.204 kb on - strand, within CA264_17470at 4072.204 kb on - strand, within CA264_17470at 4072.262 kb on - strandat 4072.270 kb on + strandat 4072.270 kb on + strandat 4072.344 kb on - strandat 4072.396 kb on - strandat 4072.577 kb on - strand, within CA264_17475at 4072.610 kb on + strand, within CA264_17475at 4072.778 kb on + strand, within CA264_17475at 4072.789 kb on + strand, within CA264_17475at 4072.820 kb on + strand, within CA264_17475at 4072.988 kb on + strand, within CA264_17475at 4072.988 kb on + strand, within CA264_17475at 4072.988 kb on + strand, within CA264_17475at 4072.989 kb on - strand, within CA264_17475at 4073.201 kb on - strand, within CA264_17475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
remove
4,070,769 + CA264_17460 0.86 -0.3
4,070,774 - CA264_17460 0.87 -0.3
4,070,774 - CA264_17460 0.87 -0.2
4,070,846 - -0.7
4,070,922 + -1.2
4,070,957 - +0.0
4,070,957 - -0.6
4,070,961 - +0.4
4,071,017 + +0.5
4,071,018 - +0.3
4,071,018 - -0.2
4,071,027 + -0.1
4,071,027 + -0.3
4,071,142 + +0.0
4,071,184 - -0.7
4,071,184 - -0.4
4,071,196 + -0.0
4,071,197 - +0.4
4,071,585 - +1.2
4,071,585 - -0.4
4,071,617 + -2.3
4,071,619 + +0.7
4,071,641 - +0.5
4,071,645 + -0.1
4,071,645 + -1.0
4,071,645 + +0.2
4,071,645 + +0.7
4,071,646 - -0.0
4,071,650 + -0.3
4,071,650 + +0.3
4,071,650 + -0.6
4,071,650 + -0.0
4,071,650 + +0.4
4,071,651 - +0.2
4,071,651 - +0.0
4,071,651 - +0.1
4,071,651 - -0.5
4,071,714 + +0.2
4,071,714 + -0.7
4,071,715 - -1.2
4,071,727 + +0.6
4,071,727 + -0.6
4,071,727 + +0.2
4,071,735 + +0.6
4,071,751 + CA264_17470 0.12 +0.3
4,071,751 + CA264_17470 0.12 +0.2
4,071,752 - CA264_17470 0.12 -0.9
4,071,818 - CA264_17470 0.22 +0.6
4,071,820 - CA264_17470 0.23 -0.2
4,071,820 - CA264_17470 0.23 +0.0
4,071,820 - CA264_17470 0.23 +0.6
4,071,862 - CA264_17470 0.29 +0.7
4,071,874 + CA264_17470 0.31 -0.5
4,071,874 + CA264_17470 0.31 +0.9
4,071,875 - CA264_17470 0.31 -1.1
4,071,875 - CA264_17470 0.31 +1.4
4,071,880 + CA264_17470 0.32 +2.4
4,071,902 + CA264_17470 0.36 +0.9
4,071,931 - CA264_17470 0.40 +0.3
4,071,944 - CA264_17470 0.42 +0.3
4,071,944 - CA264_17470 0.42 +0.3
4,071,954 + CA264_17470 0.44 -1.0
4,071,954 + CA264_17470 0.44 -0.7
4,071,954 + CA264_17470 0.44 -0.4
4,071,954 + CA264_17470 0.44 +0.3
4,071,954 + CA264_17470 0.44 +0.1
4,071,954 + CA264_17470 0.44 -0.1
4,071,954 + CA264_17470 0.44 +0.2
4,071,955 - CA264_17470 0.44 +0.3
4,071,955 - CA264_17470 0.44 +0.7
4,071,955 - CA264_17470 0.44 +0.8
4,071,955 - CA264_17470 0.44 +2.6
4,071,955 - CA264_17470 0.44 +0.6
4,071,993 + CA264_17470 0.50 -0.1
4,071,993 + CA264_17470 0.50 +0.9
4,071,994 - CA264_17470 0.50 +0.9
4,072,009 + CA264_17470 0.53 -0.2
4,072,039 - CA264_17470 0.57 +0.4
4,072,042 + CA264_17470 0.58 +1.2
4,072,043 - CA264_17470 0.58 +0.4
4,072,043 - CA264_17470 0.58 -0.2
4,072,043 - CA264_17470 0.58 -1.1
4,072,065 + CA264_17470 0.61 +0.8
4,072,066 - CA264_17470 0.62 -0.1
4,072,090 + CA264_17470 0.65 +0.2
4,072,090 + CA264_17470 0.65 -0.2
4,072,091 - CA264_17470 0.66 -0.7
4,072,147 + CA264_17470 0.74 +0.5
4,072,147 + CA264_17470 0.74 +0.5
4,072,147 + CA264_17470 0.74 -0.3
4,072,147 + CA264_17470 0.74 -0.3
4,072,148 - CA264_17470 0.75 -0.7
4,072,148 - CA264_17470 0.75 +0.2
4,072,149 + CA264_17470 0.75 +0.6
4,072,150 - CA264_17470 0.75 -0.3
4,072,156 + CA264_17470 0.76 -0.5
4,072,186 + CA264_17470 0.81 -0.5
4,072,199 + CA264_17470 0.83 -0.8
4,072,203 + CA264_17470 0.83 +0.0
4,072,204 - CA264_17470 0.83 -0.2
4,072,204 - CA264_17470 0.83 +0.1
4,072,262 - -0.3
4,072,270 + -0.8
4,072,270 + -0.1
4,072,344 - -0.3
4,072,396 - -0.5
4,072,577 - CA264_17475 0.21 -1.4
4,072,610 + CA264_17475 0.24 +0.5
4,072,778 + CA264_17475 0.39 +0.2
4,072,789 + CA264_17475 0.40 -1.3
4,072,820 + CA264_17475 0.43 -0.0
4,072,988 + CA264_17475 0.58 +0.3
4,072,988 + CA264_17475 0.58 -0.5
4,072,988 + CA264_17475 0.58 -1.0
4,072,989 - CA264_17475 0.58 +0.6
4,073,201 - CA264_17475 0.77 +1.2

Or see this region's nucleotide sequence