Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17320

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17315 and CA264_17320 are separated by 876 nucleotidesCA264_17320 and CA264_17325 overlap by 23 nucleotides CA264_17315: CA264_17315 - glycine--tRNA ligase, at 4,031,427 to 4,032,929 _17315 CA264_17320: CA264_17320 - hypothetical protein, at 4,033,806 to 4,036,313 _17320 CA264_17325: CA264_17325 - isoleucine--tRNA ligase, at 4,036,291 to 4,039,644 _17325 Position (kb) 4033 4034 4035 4036 4037Strain fitness (log2 ratio) -2 -1 0 1 2at 4032.928 kb on - strandat 4032.932 kb on - strandat 4032.934 kb on - strandat 4032.937 kb on + strandat 4032.939 kb on + strandat 4032.954 kb on + strandat 4032.954 kb on + strandat 4033.101 kb on + strandat 4033.121 kb on + strandat 4033.163 kb on - strandat 4033.165 kb on + strandat 4033.172 kb on - strandat 4033.175 kb on + strandat 4033.268 kb on + strandat 4033.269 kb on - strandat 4033.269 kb on - strandat 4033.312 kb on - strandat 4033.334 kb on + strandat 4033.334 kb on + strandat 4033.348 kb on - strandat 4033.380 kb on - strandat 4033.380 kb on - strandat 4033.380 kb on - strandat 4033.456 kb on + strandat 4033.460 kb on + strandat 4033.545 kb on - strandat 4033.639 kb on + strandat 4033.734 kb on + strandat 4033.734 kb on + strandat 4033.735 kb on - strandat 4033.735 kb on - strandat 4033.757 kb on + strandat 4033.758 kb on - strandat 4033.814 kb on + strandat 4033.841 kb on + strandat 4033.883 kb on + strandat 4033.891 kb on - strandat 4033.891 kb on - strandat 4033.906 kb on + strandat 4033.907 kb on - strandat 4033.977 kb on - strandat 4034.038 kb on - strandat 4034.055 kb on - strandat 4034.055 kb on - strandat 4034.092 kb on + strand, within CA264_17320at 4034.093 kb on - strand, within CA264_17320at 4034.093 kb on - strand, within CA264_17320at 4034.102 kb on - strand, within CA264_17320at 4034.110 kb on + strand, within CA264_17320at 4034.111 kb on - strand, within CA264_17320at 4034.166 kb on - strand, within CA264_17320at 4034.306 kb on - strand, within CA264_17320at 4034.354 kb on + strand, within CA264_17320at 4034.354 kb on + strand, within CA264_17320at 4034.355 kb on - strand, within CA264_17320at 4034.356 kb on + strand, within CA264_17320at 4034.357 kb on - strand, within CA264_17320at 4034.395 kb on + strand, within CA264_17320at 4034.449 kb on + strand, within CA264_17320at 4034.501 kb on + strand, within CA264_17320at 4034.502 kb on - strand, within CA264_17320at 4034.611 kb on + strand, within CA264_17320at 4034.629 kb on + strand, within CA264_17320at 4034.630 kb on - strand, within CA264_17320at 4034.632 kb on + strand, within CA264_17320at 4034.633 kb on - strand, within CA264_17320at 4034.633 kb on - strand, within CA264_17320at 4034.639 kb on + strand, within CA264_17320at 4034.640 kb on - strand, within CA264_17320at 4034.640 kb on - strand, within CA264_17320at 4034.640 kb on - strand, within CA264_17320at 4034.673 kb on + strand, within CA264_17320at 4034.673 kb on + strand, within CA264_17320at 4034.673 kb on + strand, within CA264_17320at 4034.673 kb on + strand, within CA264_17320at 4034.674 kb on - strand, within CA264_17320at 4034.674 kb on - strand, within CA264_17320at 4034.674 kb on - strand, within CA264_17320at 4034.674 kb on - strand, within CA264_17320at 4034.677 kb on + strand, within CA264_17320at 4034.677 kb on + strand, within CA264_17320at 4034.717 kb on + strand, within CA264_17320at 4034.718 kb on - strand, within CA264_17320at 4034.743 kb on + strand, within CA264_17320at 4034.780 kb on + strand, within CA264_17320at 4034.781 kb on - strand, within CA264_17320at 4034.807 kb on + strand, within CA264_17320at 4034.807 kb on + strand, within CA264_17320at 4034.808 kb on - strand, within CA264_17320at 4034.819 kb on + strand, within CA264_17320at 4034.827 kb on + strand, within CA264_17320at 4034.827 kb on + strand, within CA264_17320at 4034.828 kb on - strand, within CA264_17320at 4034.832 kb on + strand, within CA264_17320at 4034.833 kb on - strand, within CA264_17320at 4034.877 kb on - strand, within CA264_17320at 4034.880 kb on - strand, within CA264_17320at 4034.880 kb on - strand, within CA264_17320at 4034.881 kb on + strand, within CA264_17320at 4034.882 kb on - strand, within CA264_17320at 4034.882 kb on - strand, within CA264_17320at 4034.882 kb on - strand, within CA264_17320at 4035.021 kb on + strand, within CA264_17320at 4035.021 kb on + strand, within CA264_17320at 4035.039 kb on - strand, within CA264_17320at 4035.041 kb on - strand, within CA264_17320at 4035.066 kb on + strand, within CA264_17320at 4035.066 kb on + strand, within CA264_17320at 4035.067 kb on - strand, within CA264_17320at 4035.087 kb on + strand, within CA264_17320at 4035.087 kb on + strand, within CA264_17320at 4035.088 kb on - strand, within CA264_17320at 4035.088 kb on - strand, within CA264_17320at 4035.088 kb on - strand, within CA264_17320at 4035.088 kb on - strand, within CA264_17320at 4035.272 kb on - strand, within CA264_17320at 4035.285 kb on - strand, within CA264_17320at 4035.365 kb on + strand, within CA264_17320at 4035.394 kb on + strand, within CA264_17320at 4035.395 kb on - strand, within CA264_17320at 4035.476 kb on - strand, within CA264_17320at 4035.490 kb on + strand, within CA264_17320at 4035.491 kb on - strand, within CA264_17320at 4035.491 kb on - strand, within CA264_17320at 4035.530 kb on + strand, within CA264_17320at 4035.590 kb on + strand, within CA264_17320at 4035.701 kb on + strand, within CA264_17320at 4035.727 kb on + strand, within CA264_17320at 4035.752 kb on + strand, within CA264_17320at 4035.753 kb on - strand, within CA264_17320at 4035.767 kb on - strand, within CA264_17320at 4035.797 kb on - strand, within CA264_17320at 4035.807 kb on - strand, within CA264_17320at 4035.854 kb on + strand, within CA264_17320at 4035.854 kb on + strand, within CA264_17320at 4035.863 kb on - strand, within CA264_17320at 4035.874 kb on + strand, within CA264_17320at 4035.874 kb on + strand, within CA264_17320at 4035.874 kb on + strand, within CA264_17320at 4035.875 kb on - strand, within CA264_17320at 4035.921 kb on + strand, within CA264_17320at 4035.923 kb on + strand, within CA264_17320at 4035.923 kb on + strand, within CA264_17320at 4035.924 kb on - strand, within CA264_17320at 4035.924 kb on - strand, within CA264_17320at 4036.012 kb on - strand, within CA264_17320at 4036.081 kb on + strandat 4036.082 kb on - strandat 4036.136 kb on + strandat 4036.136 kb on + strandat 4036.137 kb on - strandat 4036.137 kb on - strandat 4036.167 kb on + strandat 4036.167 kb on + strandat 4036.167 kb on + strandat 4036.171 kb on + strandat 4036.171 kb on + strandat 4036.171 kb on + strandat 4036.172 kb on - strandat 4036.172 kb on - strandat 4036.172 kb on - strandat 4036.172 kb on - strandat 4036.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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4,032,928 - -1.0
4,032,932 - +1.4
4,032,934 - -0.3
4,032,937 + -0.6
4,032,939 + +0.6
4,032,954 + +1.7
4,032,954 + -0.0
4,033,101 + +0.6
4,033,121 + -0.0
4,033,163 - -0.1
4,033,165 + +0.2
4,033,172 - -0.7
4,033,175 + -0.1
4,033,268 + +1.6
4,033,269 - -0.0
4,033,269 - +1.0
4,033,312 - -1.9
4,033,334 + +0.0
4,033,334 + -0.8
4,033,348 - +0.2
4,033,380 - +0.0
4,033,380 - +0.8
4,033,380 - -0.5
4,033,456 + -0.8
4,033,460 + +0.6
4,033,545 - +0.1
4,033,639 + -0.0
4,033,734 + +0.2
4,033,734 + +1.3
4,033,735 - +0.6
4,033,735 - +0.3
4,033,757 + +0.6
4,033,758 - -2.0
4,033,814 + -0.3
4,033,841 + -0.1
4,033,883 + -1.1
4,033,891 - -0.5
4,033,891 - +1.2
4,033,906 + -0.5
4,033,907 - +0.3
4,033,977 - -1.8
4,034,038 - -0.6
4,034,055 - +0.5
4,034,055 - -1.7
4,034,092 + CA264_17320 0.11 +1.3
4,034,093 - CA264_17320 0.11 -0.0
4,034,093 - CA264_17320 0.11 +0.9
4,034,102 - CA264_17320 0.12 -0.4
4,034,110 + CA264_17320 0.12 -0.1
4,034,111 - CA264_17320 0.12 -0.2
4,034,166 - CA264_17320 0.14 -0.5
4,034,306 - CA264_17320 0.20 -0.2
4,034,354 + CA264_17320 0.22 +0.1
4,034,354 + CA264_17320 0.22 -0.1
4,034,355 - CA264_17320 0.22 -0.4
4,034,356 + CA264_17320 0.22 +0.3
4,034,357 - CA264_17320 0.22 -0.0
4,034,395 + CA264_17320 0.23 +0.3
4,034,449 + CA264_17320 0.26 -0.3
4,034,501 + CA264_17320 0.28 +2.5
4,034,502 - CA264_17320 0.28 -0.4
4,034,611 + CA264_17320 0.32 +0.2
4,034,629 + CA264_17320 0.33 +0.2
4,034,630 - CA264_17320 0.33 -0.2
4,034,632 + CA264_17320 0.33 -0.5
4,034,633 - CA264_17320 0.33 +1.9
4,034,633 - CA264_17320 0.33 +0.5
4,034,639 + CA264_17320 0.33 +0.0
4,034,640 - CA264_17320 0.33 -1.2
4,034,640 - CA264_17320 0.33 +0.3
4,034,640 - CA264_17320 0.33 +0.4
4,034,673 + CA264_17320 0.35 -1.0
4,034,673 + CA264_17320 0.35 +0.6
4,034,673 + CA264_17320 0.35 -1.1
4,034,673 + CA264_17320 0.35 +0.2
4,034,674 - CA264_17320 0.35 +0.4
4,034,674 - CA264_17320 0.35 +0.1
4,034,674 - CA264_17320 0.35 +0.1
4,034,674 - CA264_17320 0.35 -1.1
4,034,677 + CA264_17320 0.35 +1.6
4,034,677 + CA264_17320 0.35 +0.4
4,034,717 + CA264_17320 0.36 +0.7
4,034,718 - CA264_17320 0.36 +0.0
4,034,743 + CA264_17320 0.37 -0.4
4,034,780 + CA264_17320 0.39 +0.5
4,034,781 - CA264_17320 0.39 -0.1
4,034,807 + CA264_17320 0.40 +0.4
4,034,807 + CA264_17320 0.40 +0.3
4,034,808 - CA264_17320 0.40 -0.2
4,034,819 + CA264_17320 0.40 +1.2
4,034,827 + CA264_17320 0.41 -0.4
4,034,827 + CA264_17320 0.41 +0.2
4,034,828 - CA264_17320 0.41 +0.5
4,034,832 + CA264_17320 0.41 -0.3
4,034,833 - CA264_17320 0.41 +0.1
4,034,877 - CA264_17320 0.43 -1.3
4,034,880 - CA264_17320 0.43 -1.0
4,034,880 - CA264_17320 0.43 +0.2
4,034,881 + CA264_17320 0.43 -0.0
4,034,882 - CA264_17320 0.43 -0.4
4,034,882 - CA264_17320 0.43 +0.3
4,034,882 - CA264_17320 0.43 +0.2
4,035,021 + CA264_17320 0.48 +0.1
4,035,021 + CA264_17320 0.48 -0.3
4,035,039 - CA264_17320 0.49 -0.4
4,035,041 - CA264_17320 0.49 -0.4
4,035,066 + CA264_17320 0.50 -0.2
4,035,066 + CA264_17320 0.50 +0.0
4,035,067 - CA264_17320 0.50 -1.1
4,035,087 + CA264_17320 0.51 -0.8
4,035,087 + CA264_17320 0.51 -0.9
4,035,088 - CA264_17320 0.51 -0.2
4,035,088 - CA264_17320 0.51 +0.6
4,035,088 - CA264_17320 0.51 -0.7
4,035,088 - CA264_17320 0.51 +0.2
4,035,272 - CA264_17320 0.58 +0.7
4,035,285 - CA264_17320 0.59 -1.0
4,035,365 + CA264_17320 0.62 -0.1
4,035,394 + CA264_17320 0.63 -0.1
4,035,395 - CA264_17320 0.63 +1.1
4,035,476 - CA264_17320 0.67 +0.3
4,035,490 + CA264_17320 0.67 +0.2
4,035,491 - CA264_17320 0.67 +1.0
4,035,491 - CA264_17320 0.67 -0.1
4,035,530 + CA264_17320 0.69 -0.8
4,035,590 + CA264_17320 0.71 +0.7
4,035,701 + CA264_17320 0.76 +1.7
4,035,727 + CA264_17320 0.77 +0.7
4,035,752 + CA264_17320 0.78 -0.1
4,035,753 - CA264_17320 0.78 -2.1
4,035,767 - CA264_17320 0.78 -0.2
4,035,797 - CA264_17320 0.79 +0.3
4,035,807 - CA264_17320 0.80 +0.9
4,035,854 + CA264_17320 0.82 -0.1
4,035,854 + CA264_17320 0.82 +0.9
4,035,863 - CA264_17320 0.82 +0.5
4,035,874 + CA264_17320 0.82 -0.9
4,035,874 + CA264_17320 0.82 -0.6
4,035,874 + CA264_17320 0.82 -0.4
4,035,875 - CA264_17320 0.82 +1.1
4,035,921 + CA264_17320 0.84 -2.2
4,035,923 + CA264_17320 0.84 +0.2
4,035,923 + CA264_17320 0.84 -2.0
4,035,924 - CA264_17320 0.84 +0.1
4,035,924 - CA264_17320 0.84 +0.3
4,036,012 - CA264_17320 0.88 +0.8
4,036,081 + -1.2
4,036,082 - +0.6
4,036,136 + +0.6
4,036,136 + +0.3
4,036,137 - +0.3
4,036,137 - -2.7
4,036,167 + +0.6
4,036,167 + +0.4
4,036,167 + -0.3
4,036,171 + +0.4
4,036,171 + +0.3
4,036,171 + -0.1
4,036,172 - -0.2
4,036,172 - -0.0
4,036,172 - +1.3
4,036,172 - +0.1
4,036,264 + +0.4

Or see this region's nucleotide sequence