Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15935

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15925 and CA264_15930 are separated by 150 nucleotidesCA264_15930 and CA264_15935 are separated by 101 nucleotidesCA264_15935 and CA264_15940 are separated by 113 nucleotidesCA264_15940 and CA264_15945 are separated by 236 nucleotides CA264_15925: CA264_15925 - hypothetical protein, at 3,715,151 to 3,716,548 _15925 CA264_15930: CA264_15930 - thiol reductase thioredoxin, at 3,716,699 to 3,717,016 _15930 CA264_15935: CA264_15935 - hypothetical protein, at 3,717,118 to 3,717,846 _15935 CA264_15940: CA264_15940 - hypothetical protein, at 3,717,960 to 3,718,601 _15940 CA264_15945: CA264_15945 - NAD-dependent epimerase, at 3,718,838 to 3,719,812 _15945 Position (kb) 3717 3718Strain fitness (log2 ratio) -1 0 1 2at 3716.125 kb on + strand, within CA264_15925at 3716.169 kb on - strand, within CA264_15925at 3716.263 kb on - strand, within CA264_15925at 3716.286 kb on + strand, within CA264_15925at 3716.286 kb on + strand, within CA264_15925at 3716.286 kb on + strand, within CA264_15925at 3716.287 kb on - strand, within CA264_15925at 3716.509 kb on + strandat 3716.509 kb on + strandat 3716.601 kb on + strandat 3716.637 kb on + strandat 3716.660 kb on + strandat 3716.662 kb on + strandat 3716.701 kb on - strandat 3716.767 kb on + strand, within CA264_15930at 3716.779 kb on - strand, within CA264_15930at 3716.861 kb on - strand, within CA264_15930at 3716.871 kb on + strand, within CA264_15930at 3716.871 kb on + strand, within CA264_15930at 3716.872 kb on - strand, within CA264_15930at 3716.872 kb on - strand, within CA264_15930at 3716.972 kb on + strand, within CA264_15930at 3717.011 kb on - strandat 3717.011 kb on - strandat 3717.011 kb on - strandat 3717.017 kb on - strandat 3717.017 kb on - strandat 3717.045 kb on - strandat 3717.052 kb on + strandat 3717.052 kb on + strandat 3717.052 kb on + strandat 3717.053 kb on - strandat 3717.053 kb on - strandat 3717.053 kb on - strandat 3717.053 kb on - strandat 3717.054 kb on + strandat 3717.055 kb on - strandat 3717.305 kb on + strand, within CA264_15935at 3717.376 kb on + strand, within CA264_15935at 3717.379 kb on - strand, within CA264_15935at 3717.413 kb on + strand, within CA264_15935at 3717.536 kb on + strand, within CA264_15935at 3717.537 kb on - strand, within CA264_15935at 3717.806 kb on + strandat 3717.839 kb on - strandat 3717.851 kb on + strandat 3717.852 kb on - strandat 3717.868 kb on - strandat 3717.868 kb on - strandat 3717.869 kb on + strandat 3717.877 kb on - strandat 3717.877 kb on - strandat 3717.893 kb on + strandat 3717.961 kb on + strandat 3718.034 kb on + strand, within CA264_15940at 3718.035 kb on - strand, within CA264_15940at 3718.035 kb on - strand, within CA264_15940at 3718.118 kb on - strand, within CA264_15940at 3718.135 kb on + strand, within CA264_15940at 3718.136 kb on - strand, within CA264_15940at 3718.178 kb on - strand, within CA264_15940at 3718.178 kb on - strand, within CA264_15940at 3718.221 kb on + strand, within CA264_15940at 3718.222 kb on - strand, within CA264_15940at 3718.279 kb on + strand, within CA264_15940at 3718.379 kb on - strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.384 kb on + strand, within CA264_15940at 3718.385 kb on - strand, within CA264_15940at 3718.588 kb on - strandat 3718.608 kb on - strandat 3718.609 kb on + strandat 3718.609 kb on + strandat 3718.626 kb on - strandat 3718.640 kb on + strandat 3718.640 kb on + strandat 3718.649 kb on + strandat 3718.649 kb on + strandat 3718.649 kb on + strandat 3718.650 kb on - strandat 3718.651 kb on + strandat 3718.651 kb on + strandat 3718.652 kb on - strandat 3718.652 kb on - strandat 3718.654 kb on + strandat 3718.654 kb on + strandat 3718.654 kb on + strandat 3718.655 kb on - strandat 3718.655 kb on - strandat 3718.656 kb on + strandat 3718.657 kb on - strandat 3718.658 kb on + strandat 3718.659 kb on - strandat 3718.662 kb on - strandat 3718.662 kb on - strandat 3718.734 kb on + strandat 3718.771 kb on + strandat 3718.822 kb on - strandat 3718.829 kb on + strandat 3718.839 kb on + strandat 3718.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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3,716,125 + CA264_15925 0.70 +0.7
3,716,169 - CA264_15925 0.73 +0.1
3,716,263 - CA264_15925 0.80 +1.1
3,716,286 + CA264_15925 0.81 -0.3
3,716,286 + CA264_15925 0.81 -0.0
3,716,286 + CA264_15925 0.81 +0.1
3,716,287 - CA264_15925 0.81 -0.7
3,716,509 + +0.7
3,716,509 + +1.0
3,716,601 + -0.2
3,716,637 + -0.0
3,716,660 + +1.9
3,716,662 + -0.6
3,716,701 - -0.6
3,716,767 + CA264_15930 0.21 -0.1
3,716,779 - CA264_15930 0.25 -0.2
3,716,861 - CA264_15930 0.51 +1.0
3,716,871 + CA264_15930 0.54 +0.3
3,716,871 + CA264_15930 0.54 +0.1
3,716,872 - CA264_15930 0.54 +0.5
3,716,872 - CA264_15930 0.54 +0.4
3,716,972 + CA264_15930 0.86 -0.3
3,717,011 - -0.5
3,717,011 - -1.0
3,717,011 - -0.6
3,717,017 - +0.1
3,717,017 - +1.4
3,717,045 - +1.0
3,717,052 + -0.2
3,717,052 + +0.4
3,717,052 + -1.6
3,717,053 - -0.4
3,717,053 - -0.3
3,717,053 - +0.5
3,717,053 - -1.0
3,717,054 + -0.6
3,717,055 - +0.4
3,717,305 + CA264_15935 0.26 -0.6
3,717,376 + CA264_15935 0.35 +0.5
3,717,379 - CA264_15935 0.36 +1.1
3,717,413 + CA264_15935 0.40 -1.0
3,717,536 + CA264_15935 0.57 +0.1
3,717,537 - CA264_15935 0.57 +0.0
3,717,806 + -0.6
3,717,839 - +1.2
3,717,851 + +0.3
3,717,852 - -0.5
3,717,868 - -0.5
3,717,868 - -0.4
3,717,869 + +0.8
3,717,877 - -0.3
3,717,877 - +0.1
3,717,893 + +0.4
3,717,961 + -0.3
3,718,034 + CA264_15940 0.12 -0.2
3,718,035 - CA264_15940 0.12 +0.7
3,718,035 - CA264_15940 0.12 -0.0
3,718,118 - CA264_15940 0.25 -0.0
3,718,135 + CA264_15940 0.27 -0.6
3,718,136 - CA264_15940 0.27 +0.4
3,718,178 - CA264_15940 0.34 -0.1
3,718,178 - CA264_15940 0.34 -0.2
3,718,221 + CA264_15940 0.41 +0.5
3,718,222 - CA264_15940 0.41 +0.8
3,718,279 + CA264_15940 0.50 -0.2
3,718,379 - CA264_15940 0.65 -0.1
3,718,384 + CA264_15940 0.66 -0.2
3,718,384 + CA264_15940 0.66 -0.1
3,718,384 + CA264_15940 0.66 +0.1
3,718,384 + CA264_15940 0.66 -0.4
3,718,384 + CA264_15940 0.66 +0.7
3,718,385 - CA264_15940 0.66 -0.3
3,718,588 - +0.5
3,718,608 - +0.3
3,718,609 + +0.9
3,718,609 + -0.3
3,718,626 - -0.1
3,718,640 + +0.0
3,718,640 + +1.4
3,718,649 + +0.5
3,718,649 + +2.5
3,718,649 + +0.0
3,718,650 - +0.4
3,718,651 + -0.3
3,718,651 + +1.5
3,718,652 - +1.2
3,718,652 - -0.4
3,718,654 + -0.1
3,718,654 + +0.1
3,718,654 + -0.2
3,718,655 - +0.4
3,718,655 - +0.3
3,718,656 + -0.3
3,718,657 - +0.5
3,718,658 + +1.4
3,718,659 - -0.1
3,718,662 - -0.3
3,718,662 - -0.2
3,718,734 + -0.6
3,718,771 + +0.5
3,718,822 - +0.0
3,718,829 + +0.1
3,718,839 + -0.7
3,718,840 - +0.8

Or see this region's nucleotide sequence