Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15500

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15490 and CA264_15495 are separated by 88 nucleotidesCA264_15495 and CA264_15500 are separated by 81 nucleotidesCA264_15500 and CA264_15505 are separated by 349 nucleotides CA264_15490: CA264_15490 - hypothetical protein, at 3,628,511 to 3,629,599 _15490 CA264_15495: CA264_15495 - peptide-methionine (S)-S-oxide reductase, at 3,629,688 to 3,630,185 _15495 CA264_15500: CA264_15500 - hypothetical protein, at 3,630,267 to 3,630,806 _15500 CA264_15505: CA264_15505 - phosphatase PAP2 family protein, at 3,631,156 to 3,631,947 _15505 Position (kb) 3630 3631Strain fitness (log2 ratio) -2 -1 0 1 2at 3629.303 kb on - strand, within CA264_15490at 3629.332 kb on - strand, within CA264_15490at 3629.357 kb on + strand, within CA264_15490at 3629.357 kb on + strand, within CA264_15490at 3629.357 kb on + strand, within CA264_15490at 3629.358 kb on - strand, within CA264_15490at 3629.358 kb on - strand, within CA264_15490at 3629.358 kb on - strand, within CA264_15490at 3629.358 kb on - strand, within CA264_15490at 3629.358 kb on - strand, within CA264_15490at 3629.363 kb on + strand, within CA264_15490at 3629.500 kb on + strandat 3629.500 kb on + strandat 3629.582 kb on + strandat 3629.584 kb on + strandat 3629.602 kb on + strandat 3629.633 kb on + strandat 3629.640 kb on + strandat 3629.641 kb on - strandat 3629.651 kb on + strandat 3629.652 kb on - strandat 3629.652 kb on - strandat 3629.660 kb on + strandat 3629.662 kb on + strandat 3629.662 kb on + strandat 3629.662 kb on + strandat 3629.662 kb on + strandat 3629.663 kb on - strandat 3629.663 kb on - strandat 3629.663 kb on - strandat 3629.664 kb on + strandat 3629.664 kb on + strandat 3629.665 kb on - strandat 3629.665 kb on - strandat 3629.665 kb on - strandat 3629.680 kb on + strandat 3629.680 kb on + strandat 3629.681 kb on - strandat 3629.682 kb on + strandat 3629.782 kb on + strand, within CA264_15495at 3629.783 kb on - strand, within CA264_15495at 3629.802 kb on + strand, within CA264_15495at 3629.803 kb on - strand, within CA264_15495at 3629.803 kb on - strand, within CA264_15495at 3629.832 kb on + strand, within CA264_15495at 3629.842 kb on + strand, within CA264_15495at 3629.842 kb on + strand, within CA264_15495at 3629.842 kb on + strand, within CA264_15495at 3629.842 kb on + strand, within CA264_15495at 3629.842 kb on + strand, within CA264_15495at 3629.843 kb on - strand, within CA264_15495at 3629.843 kb on - strand, within CA264_15495at 3629.843 kb on - strand, within CA264_15495at 3629.927 kb on - strand, within CA264_15495at 3629.948 kb on + strand, within CA264_15495at 3630.183 kb on + strandat 3630.187 kb on + strandat 3630.188 kb on - strandat 3630.188 kb on - strandat 3630.188 kb on - strandat 3630.434 kb on + strand, within CA264_15500at 3630.434 kb on + strand, within CA264_15500at 3630.434 kb on + strand, within CA264_15500at 3630.434 kb on + strand, within CA264_15500at 3630.435 kb on - strand, within CA264_15500at 3630.435 kb on - strand, within CA264_15500at 3630.481 kb on - strand, within CA264_15500at 3630.543 kb on + strand, within CA264_15500at 3630.630 kb on - strand, within CA264_15500at 3630.735 kb on - strand, within CA264_15500at 3630.786 kb on - strandat 3630.795 kb on - strandat 3630.920 kb on + strandat 3630.920 kb on + strandat 3630.920 kb on + strandat 3630.920 kb on + strandat 3630.921 kb on - strandat 3630.921 kb on - strandat 3630.921 kb on - strandat 3630.921 kb on - strandat 3630.930 kb on + strandat 3630.930 kb on + strandat 3630.964 kb on + strandat 3630.965 kb on - strandat 3631.032 kb on - strandat 3631.032 kb on - strandat 3631.034 kb on - strandat 3631.043 kb on - strandat 3631.043 kb on - strandat 3631.154 kb on + strandat 3631.247 kb on - strand, within CA264_15505at 3631.385 kb on + strand, within CA264_15505at 3631.385 kb on + strand, within CA264_15505at 3631.455 kb on + strand, within CA264_15505at 3631.455 kb on + strand, within CA264_15505at 3631.456 kb on - strand, within CA264_15505at 3631.456 kb on - strand, within CA264_15505at 3631.460 kb on + strand, within CA264_15505at 3631.460 kb on + strand, within CA264_15505at 3631.460 kb on + strand, within CA264_15505at 3631.460 kb on + strand, within CA264_15505at 3631.460 kb on + strand, within CA264_15505at 3631.460 kb on + strand, within CA264_15505at 3631.461 kb on - strand, within CA264_15505at 3631.461 kb on - strand, within CA264_15505at 3631.574 kb on - strand, within CA264_15505at 3631.590 kb on + strand, within CA264_15505at 3631.661 kb on - strand, within CA264_15505at 3631.680 kb on + strand, within CA264_15505at 3631.680 kb on + strand, within CA264_15505at 3631.681 kb on - strand, within CA264_15505at 3631.683 kb on - strand, within CA264_15505at 3631.683 kb on - strand, within CA264_15505at 3631.683 kb on - strand, within CA264_15505at 3631.689 kb on + strand, within CA264_15505at 3631.690 kb on - strand, within CA264_15505at 3631.690 kb on - strand, within CA264_15505

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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3,629,303 - CA264_15490 0.73 -2.3
3,629,332 - CA264_15490 0.75 -0.4
3,629,357 + CA264_15490 0.78 +0.3
3,629,357 + CA264_15490 0.78 +0.7
3,629,357 + CA264_15490 0.78 +0.0
3,629,358 - CA264_15490 0.78 +0.0
3,629,358 - CA264_15490 0.78 -0.2
3,629,358 - CA264_15490 0.78 -1.1
3,629,358 - CA264_15490 0.78 -0.3
3,629,358 - CA264_15490 0.78 -0.1
3,629,363 + CA264_15490 0.78 -0.3
3,629,500 + -0.3
3,629,500 + -1.5
3,629,582 + -0.6
3,629,584 + -1.6
3,629,602 + +0.5
3,629,633 + +1.9
3,629,640 + +0.8
3,629,641 - +0.5
3,629,651 + +0.1
3,629,652 - +0.2
3,629,652 - +0.2
3,629,660 + -0.4
3,629,662 + +0.1
3,629,662 + +0.7
3,629,662 + +0.2
3,629,662 + +0.6
3,629,663 - -0.6
3,629,663 - +0.4
3,629,663 - -0.4
3,629,664 + -0.6
3,629,664 + +0.1
3,629,665 - +0.5
3,629,665 - -0.2
3,629,665 - +0.2
3,629,680 + -0.1
3,629,680 + +0.7
3,629,681 - +0.1
3,629,682 + +0.3
3,629,782 + CA264_15495 0.19 -0.3
3,629,783 - CA264_15495 0.19 -0.2
3,629,802 + CA264_15495 0.23 -0.1
3,629,803 - CA264_15495 0.23 +0.3
3,629,803 - CA264_15495 0.23 -1.8
3,629,832 + CA264_15495 0.29 -0.3
3,629,842 + CA264_15495 0.31 -0.1
3,629,842 + CA264_15495 0.31 +0.5
3,629,842 + CA264_15495 0.31 +0.0
3,629,842 + CA264_15495 0.31 -1.1
3,629,842 + CA264_15495 0.31 -0.0
3,629,843 - CA264_15495 0.31 +0.6
3,629,843 - CA264_15495 0.31 -0.4
3,629,843 - CA264_15495 0.31 +0.1
3,629,927 - CA264_15495 0.48 -0.2
3,629,948 + CA264_15495 0.52 +1.3
3,630,183 + -0.1
3,630,187 + -0.5
3,630,188 - +0.0
3,630,188 - +1.7
3,630,188 - -0.6
3,630,434 + CA264_15500 0.31 +0.1
3,630,434 + CA264_15500 0.31 +0.2
3,630,434 + CA264_15500 0.31 +0.3
3,630,434 + CA264_15500 0.31 -0.2
3,630,435 - CA264_15500 0.31 +0.2
3,630,435 - CA264_15500 0.31 -0.4
3,630,481 - CA264_15500 0.40 +0.9
3,630,543 + CA264_15500 0.51 +1.3
3,630,630 - CA264_15500 0.67 -0.7
3,630,735 - CA264_15500 0.87 +0.2
3,630,786 - -0.2
3,630,795 - -1.2
3,630,920 + -1.0
3,630,920 + -1.6
3,630,920 + -0.6
3,630,920 + +0.1
3,630,921 - -0.5
3,630,921 - +0.2
3,630,921 - -0.4
3,630,921 - +0.1
3,630,930 + -0.5
3,630,930 + +0.4
3,630,964 + +0.0
3,630,965 - +0.4
3,631,032 - -0.3
3,631,032 - -0.5
3,631,034 - +0.8
3,631,043 - -0.8
3,631,043 - -0.4
3,631,154 + +0.3
3,631,247 - CA264_15505 0.11 -0.0
3,631,385 + CA264_15505 0.29 +0.9
3,631,385 + CA264_15505 0.29 -1.9
3,631,455 + CA264_15505 0.38 +0.5
3,631,455 + CA264_15505 0.38 -0.5
3,631,456 - CA264_15505 0.38 +0.4
3,631,456 - CA264_15505 0.38 +0.7
3,631,460 + CA264_15505 0.38 -0.1
3,631,460 + CA264_15505 0.38 -0.1
3,631,460 + CA264_15505 0.38 -0.5
3,631,460 + CA264_15505 0.38 +0.1
3,631,460 + CA264_15505 0.38 +0.4
3,631,460 + CA264_15505 0.38 -0.5
3,631,461 - CA264_15505 0.39 -0.4
3,631,461 - CA264_15505 0.39 -0.6
3,631,574 - CA264_15505 0.53 +0.9
3,631,590 + CA264_15505 0.55 -0.5
3,631,661 - CA264_15505 0.64 -0.4
3,631,680 + CA264_15505 0.66 -0.1
3,631,680 + CA264_15505 0.66 -1.1
3,631,681 - CA264_15505 0.66 -1.4
3,631,683 - CA264_15505 0.67 +0.6
3,631,683 - CA264_15505 0.67 +0.0
3,631,683 - CA264_15505 0.67 -0.4
3,631,689 + CA264_15505 0.67 -2.0
3,631,690 - CA264_15505 0.67 -0.5
3,631,690 - CA264_15505 0.67 +0.2

Or see this region's nucleotide sequence