Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15145

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15140 and CA264_15145 are separated by 151 nucleotidesCA264_15145 and CA264_15150 are separated by 9 nucleotidesCA264_15150 and CA264_15155 overlap by 92 nucleotidesCA264_15155 and CA264_15160 are separated by 169 nucleotides CA264_15140: CA264_15140 - cysteine desulfurase, at 3,550,678 to 3,551,820 _15140 CA264_15145: CA264_15145 - phosphoglucosamine mutase, at 3,551,972 to 3,553,363 _15145 CA264_15150: CA264_15150 - hypothetical protein, at 3,553,373 to 3,553,627 _15150 CA264_15155: CA264_15155 - hypothetical protein, at 3,553,536 to 3,553,796 _15155 CA264_15160: CA264_15160 - nucleoside triphosphate pyrophosphohydrolase, at 3,553,966 to 3,554,775 _15160 Position (kb) 3551 3552 3553 3554Strain fitness (log2 ratio) -2 -1 0 1 2at 3551.821 kb on - strandat 3551.867 kb on + strandat 3551.925 kb on - strandat 3551.925 kb on - strandat 3551.936 kb on + strandat 3551.936 kb on + strandat 3551.936 kb on + strandat 3551.966 kb on + strandat 3551.967 kb on - strandat 3551.982 kb on - strandat 3553.370 kb on + strandat 3553.371 kb on - strandat 3553.371 kb on - strandat 3553.371 kb on - strandat 3553.372 kb on + strandat 3553.372 kb on + strandat 3553.403 kb on - strand, within CA264_15150at 3553.406 kb on + strand, within CA264_15150at 3553.408 kb on + strand, within CA264_15150at 3553.409 kb on - strand, within CA264_15150at 3553.409 kb on - strand, within CA264_15150at 3553.422 kb on + strand, within CA264_15150at 3553.537 kb on + strandat 3553.626 kb on - strandat 3553.741 kb on - strand, within CA264_15155at 3553.796 kb on + strandat 3553.800 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.802 kb on - strandat 3553.806 kb on + strandat 3553.806 kb on + strandat 3553.806 kb on + strandat 3553.808 kb on + strandat 3553.809 kb on - strandat 3553.809 kb on - strandat 3553.809 kb on - strandat 3553.809 kb on - strandat 3553.908 kb on - strandat 3553.938 kb on - strandat 3553.942 kb on + strandat 3554.119 kb on + strand, within CA264_15160at 3554.120 kb on - strand, within CA264_15160at 3554.120 kb on - strand, within CA264_15160at 3554.162 kb on + strand, within CA264_15160at 3554.184 kb on + strand, within CA264_15160at 3554.184 kb on + strand, within CA264_15160at 3554.185 kb on - strand, within CA264_15160at 3554.185 kb on - strand, within CA264_15160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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3,551,821 - +1.9
3,551,867 + -1.0
3,551,925 - -1.3
3,551,925 - -0.8
3,551,936 + -0.7
3,551,936 + -2.7
3,551,936 + -0.3
3,551,966 + -0.9
3,551,967 - -0.3
3,551,982 - -0.9
3,553,370 + -1.2
3,553,371 - -0.3
3,553,371 - -0.8
3,553,371 - -0.8
3,553,372 + -0.4
3,553,372 + +0.3
3,553,403 - CA264_15150 0.12 +1.2
3,553,406 + CA264_15150 0.13 +1.2
3,553,408 + CA264_15150 0.14 -0.3
3,553,409 - CA264_15150 0.14 -0.9
3,553,409 - CA264_15150 0.14 -1.0
3,553,422 + CA264_15150 0.19 -0.6
3,553,537 + -0.3
3,553,626 - -2.1
3,553,741 - CA264_15155 0.79 -0.3
3,553,796 + +0.2
3,553,800 - -0.1
3,553,802 - -0.7
3,553,802 - +0.9
3,553,802 - -1.5
3,553,802 - -1.1
3,553,802 - -0.4
3,553,806 + -1.3
3,553,806 + +0.9
3,553,806 + -1.0
3,553,808 + +0.5
3,553,809 - -2.5
3,553,809 - -0.7
3,553,809 - -1.0
3,553,809 - -0.5
3,553,908 - -0.9
3,553,938 - -1.6
3,553,942 + -0.9
3,554,119 + CA264_15160 0.19 -0.8
3,554,120 - CA264_15160 0.19 -0.3
3,554,120 - CA264_15160 0.19 -1.4
3,554,162 + CA264_15160 0.24 -0.7
3,554,184 + CA264_15160 0.27 +1.5
3,554,184 + CA264_15160 0.27 -0.7
3,554,185 - CA264_15160 0.27 -0.8
3,554,185 - CA264_15160 0.27 -0.1

Or see this region's nucleotide sequence