Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08795

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08785 and CA264_08790 are separated by 7 nucleotidesCA264_08790 and CA264_08795 overlap by 4 nucleotidesCA264_08795 and CA264_08800 overlap by 4 nucleotidesCA264_08800 and CA264_08805 are separated by 8 nucleotides CA264_08785: CA264_08785 - hypothetical protein, at 2,051,432 to 2,052,622 _08785 CA264_08790: CA264_08790 - LamB/YcsF family protein, at 2,052,630 to 2,053,391 _08790 CA264_08795: CA264_08795 - KipI antagonist, at 2,053,388 to 2,054,401 _08795 CA264_08800: CA264_08800 - kinase inhibitor, at 2,054,398 to 2,055,126 _08800 CA264_08805: CA264_08805 - inosine/xanthosine triphosphatase, at 2,055,135 to 2,055,701 _08805 Position (kb) 2053 2054 2055Strain fitness (log2 ratio) -2 -1 0 1 2at 2052.409 kb on + strand, within CA264_08785at 2052.450 kb on - strand, within CA264_08785at 2052.456 kb on - strand, within CA264_08785at 2052.481 kb on + strand, within CA264_08785at 2052.739 kb on - strand, within CA264_08790at 2052.823 kb on - strand, within CA264_08790at 2052.878 kb on + strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.879 kb on - strand, within CA264_08790at 2052.958 kb on + strand, within CA264_08790at 2052.963 kb on + strand, within CA264_08790at 2052.963 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.965 kb on + strand, within CA264_08790at 2052.978 kb on + strand, within CA264_08790at 2052.979 kb on - strand, within CA264_08790at 2052.979 kb on - strand, within CA264_08790at 2053.040 kb on - strand, within CA264_08790at 2053.118 kb on - strand, within CA264_08790at 2053.132 kb on + strand, within CA264_08790at 2053.132 kb on + strand, within CA264_08790at 2053.133 kb on - strand, within CA264_08790at 2053.273 kb on + strand, within CA264_08790at 2053.274 kb on - strand, within CA264_08790at 2053.298 kb on + strand, within CA264_08790at 2053.298 kb on + strand, within CA264_08790at 2053.401 kb on - strandat 2053.401 kb on - strandat 2053.453 kb on - strandat 2053.457 kb on + strandat 2053.458 kb on - strandat 2053.458 kb on - strandat 2053.458 kb on - strandat 2053.595 kb on - strand, within CA264_08795at 2053.638 kb on + strand, within CA264_08795at 2053.639 kb on - strand, within CA264_08795at 2053.639 kb on - strand, within CA264_08795at 2053.685 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.687 kb on + strand, within CA264_08795at 2053.688 kb on - strand, within CA264_08795at 2053.688 kb on - strand, within CA264_08795at 2053.688 kb on - strand, within CA264_08795at 2053.691 kb on - strand, within CA264_08795at 2053.730 kb on + strand, within CA264_08795at 2053.731 kb on - strand, within CA264_08795at 2053.753 kb on + strand, within CA264_08795at 2053.753 kb on + strand, within CA264_08795at 2053.753 kb on + strand, within CA264_08795at 2053.754 kb on - strand, within CA264_08795at 2053.755 kb on + strand, within CA264_08795at 2053.775 kb on - strand, within CA264_08795at 2053.775 kb on - strand, within CA264_08795at 2053.786 kb on - strand, within CA264_08795at 2053.828 kb on - strand, within CA264_08795at 2053.911 kb on - strand, within CA264_08795at 2054.008 kb on - strand, within CA264_08795at 2054.011 kb on + strand, within CA264_08795at 2054.012 kb on - strand, within CA264_08795at 2054.065 kb on - strand, within CA264_08795at 2054.070 kb on + strand, within CA264_08795at 2054.071 kb on - strand, within CA264_08795at 2054.071 kb on - strand, within CA264_08795at 2054.385 kb on - strandat 2054.474 kb on - strand, within CA264_08800at 2054.605 kb on + strand, within CA264_08800at 2054.607 kb on + strand, within CA264_08800at 2054.608 kb on - strand, within CA264_08800at 2054.608 kb on - strand, within CA264_08800at 2054.705 kb on + strand, within CA264_08800at 2054.705 kb on + strand, within CA264_08800at 2054.754 kb on + strand, within CA264_08800at 2054.798 kb on + strand, within CA264_08800at 2054.798 kb on + strand, within CA264_08800at 2054.799 kb on - strand, within CA264_08800at 2054.891 kb on + strand, within CA264_08800at 2054.934 kb on - strand, within CA264_08800at 2054.934 kb on - strand, within CA264_08800at 2054.966 kb on + strand, within CA264_08800at 2054.967 kb on - strand, within CA264_08800at 2054.967 kb on - strand, within CA264_08800at 2054.967 kb on - strand, within CA264_08800at 2055.028 kb on + strand, within CA264_08800at 2055.029 kb on - strand, within CA264_08800at 2055.039 kb on + strand, within CA264_08800at 2055.039 kb on + strand, within CA264_08800at 2055.040 kb on - strand, within CA264_08800at 2055.043 kb on + strand, within CA264_08800at 2055.043 kb on + strand, within CA264_08800at 2055.092 kb on - strandat 2055.126 kb on + strandat 2055.126 kb on + strandat 2055.130 kb on + strandat 2055.130 kb on + strandat 2055.130 kb on + strandat 2055.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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2,052,409 + CA264_08785 0.82 -0.4
2,052,450 - CA264_08785 0.85 -0.1
2,052,456 - CA264_08785 0.86 -0.5
2,052,481 + CA264_08785 0.88 +2.2
2,052,739 - CA264_08790 0.14 -0.4
2,052,823 - CA264_08790 0.25 -0.4
2,052,878 + CA264_08790 0.33 +0.2
2,052,879 - CA264_08790 0.33 -0.1
2,052,879 - CA264_08790 0.33 +1.2
2,052,879 - CA264_08790 0.33 +0.3
2,052,958 + CA264_08790 0.43 -0.1
2,052,963 + CA264_08790 0.44 -0.6
2,052,963 + CA264_08790 0.44 +0.4
2,052,965 + CA264_08790 0.44 +1.0
2,052,965 + CA264_08790 0.44 -0.4
2,052,965 + CA264_08790 0.44 +0.7
2,052,978 + CA264_08790 0.46 -0.5
2,052,979 - CA264_08790 0.46 -2.4
2,052,979 - CA264_08790 0.46 +0.1
2,053,040 - CA264_08790 0.54 -0.1
2,053,118 - CA264_08790 0.64 -0.1
2,053,132 + CA264_08790 0.66 +0.4
2,053,132 + CA264_08790 0.66 -0.4
2,053,133 - CA264_08790 0.66 +0.0
2,053,273 + CA264_08790 0.84 -1.3
2,053,274 - CA264_08790 0.85 +0.1
2,053,298 + CA264_08790 0.88 +0.1
2,053,298 + CA264_08790 0.88 -0.2
2,053,401 - -0.9
2,053,401 - +0.5
2,053,453 - -0.0
2,053,457 + -0.8
2,053,458 - +0.7
2,053,458 - -0.3
2,053,458 - -0.6
2,053,595 - CA264_08795 0.20 -0.1
2,053,638 + CA264_08795 0.25 +0.2
2,053,639 - CA264_08795 0.25 -0.2
2,053,639 - CA264_08795 0.25 +1.6
2,053,685 + CA264_08795 0.29 +0.1
2,053,687 + CA264_08795 0.29 -0.9
2,053,687 + CA264_08795 0.29 +0.0
2,053,687 + CA264_08795 0.29 +0.9
2,053,687 + CA264_08795 0.29 -0.4
2,053,687 + CA264_08795 0.29 +0.0
2,053,688 - CA264_08795 0.30 +0.3
2,053,688 - CA264_08795 0.30 -0.0
2,053,688 - CA264_08795 0.30 +0.4
2,053,691 - CA264_08795 0.30 +0.5
2,053,730 + CA264_08795 0.34 +0.6
2,053,731 - CA264_08795 0.34 +1.2
2,053,753 + CA264_08795 0.36 -0.0
2,053,753 + CA264_08795 0.36 +0.8
2,053,753 + CA264_08795 0.36 +0.0
2,053,754 - CA264_08795 0.36 -0.1
2,053,755 + CA264_08795 0.36 -0.2
2,053,775 - CA264_08795 0.38 -0.6
2,053,775 - CA264_08795 0.38 +0.2
2,053,786 - CA264_08795 0.39 +0.1
2,053,828 - CA264_08795 0.43 -0.4
2,053,911 - CA264_08795 0.52 -0.8
2,054,008 - CA264_08795 0.61 +0.8
2,054,011 + CA264_08795 0.61 -0.5
2,054,012 - CA264_08795 0.62 +0.3
2,054,065 - CA264_08795 0.67 +0.1
2,054,070 + CA264_08795 0.67 +2.0
2,054,071 - CA264_08795 0.67 +0.2
2,054,071 - CA264_08795 0.67 -0.8
2,054,385 - -0.2
2,054,474 - CA264_08800 0.10 +0.1
2,054,605 + CA264_08800 0.28 +0.7
2,054,607 + CA264_08800 0.29 +0.1
2,054,608 - CA264_08800 0.29 -0.7
2,054,608 - CA264_08800 0.29 -1.0
2,054,705 + CA264_08800 0.42 -1.0
2,054,705 + CA264_08800 0.42 +0.2
2,054,754 + CA264_08800 0.49 -0.1
2,054,798 + CA264_08800 0.55 +0.1
2,054,798 + CA264_08800 0.55 +0.7
2,054,799 - CA264_08800 0.55 +0.4
2,054,891 + CA264_08800 0.68 -0.9
2,054,934 - CA264_08800 0.74 -0.4
2,054,934 - CA264_08800 0.74 -1.2
2,054,966 + CA264_08800 0.78 +0.8
2,054,967 - CA264_08800 0.78 +0.0
2,054,967 - CA264_08800 0.78 -0.1
2,054,967 - CA264_08800 0.78 +0.6
2,055,028 + CA264_08800 0.86 -0.2
2,055,029 - CA264_08800 0.87 +0.6
2,055,039 + CA264_08800 0.88 +2.2
2,055,039 + CA264_08800 0.88 +0.2
2,055,040 - CA264_08800 0.88 +0.4
2,055,043 + CA264_08800 0.88 +0.7
2,055,043 + CA264_08800 0.88 +0.1
2,055,092 - -0.8
2,055,126 + +0.4
2,055,126 + -0.0
2,055,130 + -1.0
2,055,130 + -0.6
2,055,130 + +0.2
2,055,130 - -0.7

Or see this region's nucleotide sequence