Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05095

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05090 and CA264_05095 are separated by 242 nucleotidesCA264_05095 and CA264_05100 are separated by 323 nucleotidesCA264_05100 and CA264_05105 overlap by 4 nucleotides CA264_05090: CA264_05090 - 3-deoxy-7-phosphoheptulonate synthase, at 1,177,957 to 1,178,967 _05090 CA264_05095: CA264_05095 - magnesium transporter, at 1,179,210 to 1,180,553 _05095 CA264_05100: CA264_05100 - imidazole glycerol phosphate synthase subunit HisH, at 1,180,877 to 1,181,458 _05100 CA264_05105: CA264_05105 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,181,455 to 1,182,177 _05105 Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -2 -1 0 1 2at 1178.221 kb on - strand, within CA264_05090at 1178.322 kb on - strand, within CA264_05090at 1178.346 kb on + strand, within CA264_05090at 1178.355 kb on + strand, within CA264_05090at 1178.365 kb on + strand, within CA264_05090at 1178.366 kb on - strand, within CA264_05090at 1178.412 kb on + strand, within CA264_05090at 1178.413 kb on - strand, within CA264_05090at 1178.469 kb on - strand, within CA264_05090at 1178.480 kb on + strand, within CA264_05090at 1178.480 kb on + strand, within CA264_05090at 1178.485 kb on + strand, within CA264_05090at 1178.485 kb on + strand, within CA264_05090at 1178.485 kb on + strand, within CA264_05090at 1178.486 kb on - strand, within CA264_05090at 1178.625 kb on + strand, within CA264_05090at 1178.692 kb on + strand, within CA264_05090at 1178.693 kb on - strand, within CA264_05090at 1178.760 kb on - strand, within CA264_05090at 1178.760 kb on - strand, within CA264_05090at 1178.792 kb on - strand, within CA264_05090at 1178.795 kb on + strand, within CA264_05090at 1178.796 kb on - strand, within CA264_05090at 1178.802 kb on + strand, within CA264_05090at 1178.970 kb on + strandat 1179.003 kb on + strandat 1179.003 kb on + strandat 1179.004 kb on - strandat 1179.041 kb on + strandat 1179.045 kb on - strandat 1179.085 kb on - strandat 1179.209 kb on + strandat 1179.210 kb on - strandat 1179.360 kb on + strand, within CA264_05095at 1179.361 kb on - strand, within CA264_05095at 1179.372 kb on - strand, within CA264_05095at 1179.450 kb on - strand, within CA264_05095at 1179.481 kb on + strand, within CA264_05095at 1179.481 kb on + strand, within CA264_05095at 1179.482 kb on - strand, within CA264_05095at 1179.528 kb on - strand, within CA264_05095at 1179.588 kb on + strand, within CA264_05095at 1179.588 kb on + strand, within CA264_05095at 1179.617 kb on + strand, within CA264_05095at 1179.618 kb on - strand, within CA264_05095at 1179.679 kb on - strand, within CA264_05095at 1179.679 kb on - strand, within CA264_05095at 1179.774 kb on + strand, within CA264_05095at 1179.830 kb on + strand, within CA264_05095at 1179.837 kb on + strand, within CA264_05095at 1179.838 kb on - strand, within CA264_05095at 1179.887 kb on + strand, within CA264_05095at 1179.941 kb on + strand, within CA264_05095at 1179.942 kb on - strand, within CA264_05095at 1179.981 kb on + strand, within CA264_05095at 1180.148 kb on + strand, within CA264_05095at 1180.174 kb on + strand, within CA264_05095at 1180.181 kb on - strand, within CA264_05095at 1180.228 kb on + strand, within CA264_05095at 1180.228 kb on + strand, within CA264_05095at 1180.229 kb on - strand, within CA264_05095at 1180.269 kb on - strand, within CA264_05095at 1180.269 kb on - strand, within CA264_05095at 1180.270 kb on + strand, within CA264_05095at 1180.271 kb on - strand, within CA264_05095at 1180.271 kb on - strand, within CA264_05095at 1180.271 kb on - strand, within CA264_05095at 1180.324 kb on - strand, within CA264_05095at 1180.330 kb on - strand, within CA264_05095at 1180.358 kb on + strand, within CA264_05095at 1180.358 kb on + strand, within CA264_05095at 1180.413 kb on - strand, within CA264_05095at 1180.455 kb on - strandat 1180.492 kb on + strandat 1180.492 kb on + strandat 1180.492 kb on + strandat 1180.509 kb on + strandat 1180.509 kb on + strandat 1180.565 kb on - strandat 1180.602 kb on + strandat 1180.603 kb on - strandat 1180.604 kb on + strandat 1180.616 kb on + strandat 1180.618 kb on + strandat 1180.618 kb on + strandat 1180.621 kb on - strandat 1180.621 kb on - strandat 1180.621 kb on - strandat 1180.652 kb on + strandat 1180.653 kb on - strandat 1180.713 kb on + strandat 1180.714 kb on - strandat 1180.717 kb on - strandat 1180.718 kb on + strandat 1180.718 kb on + strandat 1180.719 kb on - strandat 1180.726 kb on + strandat 1180.727 kb on - strandat 1180.727 kb on - strandat 1180.727 kb on - strandat 1180.727 kb on - strandat 1180.808 kb on - strandat 1180.884 kb on + strandat 1180.888 kb on + strandat 1180.890 kb on + strandat 1180.891 kb on - strandat 1180.898 kb on + strandat 1180.899 kb on - strandat 1180.962 kb on + strand, within CA264_05100at 1180.962 kb on + strand, within CA264_05100at 1180.981 kb on + strand, within CA264_05100at 1180.984 kb on + strand, within CA264_05100at 1181.046 kb on + strand, within CA264_05100at 1181.103 kb on + strand, within CA264_05100at 1181.103 kb on + strand, within CA264_05100at 1181.104 kb on - strand, within CA264_05100at 1181.160 kb on + strand, within CA264_05100at 1181.167 kb on + strand, within CA264_05100at 1181.168 kb on - strand, within CA264_05100at 1181.280 kb on - strand, within CA264_05100at 1181.280 kb on - strandat 1181.283 kb on + strand, within CA264_05100at 1181.284 kb on - strand, within CA264_05100at 1181.284 kb on - strand, within CA264_05100at 1181.284 kb on - strand, within CA264_05100at 1181.284 kb on - strand, within CA264_05100at 1181.284 kb on - strand, within CA264_05100at 1181.285 kb on + strand, within CA264_05100at 1181.286 kb on - strand, within CA264_05100at 1181.288 kb on + strand, within CA264_05100at 1181.288 kb on + strand, within CA264_05100at 1181.288 kb on + strand, within CA264_05100at 1181.288 kb on + strand, within CA264_05100at 1181.289 kb on - strand, within CA264_05100at 1181.289 kb on - strand, within CA264_05100at 1181.289 kb on - strand, within CA264_05100at 1181.289 kb on - strand, within CA264_05100at 1181.300 kb on + strand, within CA264_05100at 1181.304 kb on - strand, within CA264_05100at 1181.321 kb on + strand, within CA264_05100at 1181.321 kb on + strand, within CA264_05100at 1181.323 kb on + strand, within CA264_05100at 1181.367 kb on + strand, within CA264_05100at 1181.372 kb on + strand, within CA264_05100at 1181.437 kb on + strandat 1181.454 kb on + strandat 1181.454 kb on + strandat 1181.454 kb on + strandat 1181.455 kb on - strandat 1181.476 kb on - strandat 1181.476 kb on - strandat 1181.477 kb on + strandat 1181.477 kb on + strandat 1181.478 kb on - strandat 1181.478 kb on - strandat 1181.478 kb on - strandat 1181.478 kb on - strandat 1181.539 kb on + strand, within CA264_05105at 1181.540 kb on - strand, within CA264_05105

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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1,178,221 - CA264_05090 0.26 -0.2
1,178,322 - CA264_05090 0.36 -1.0
1,178,346 + CA264_05090 0.38 +2.2
1,178,355 + CA264_05090 0.39 +0.7
1,178,365 + CA264_05090 0.40 +0.6
1,178,366 - CA264_05090 0.40 +0.2
1,178,412 + CA264_05090 0.45 -0.3
1,178,413 - CA264_05090 0.45 -0.1
1,178,469 - CA264_05090 0.51 +0.6
1,178,480 + CA264_05090 0.52 +0.6
1,178,480 + CA264_05090 0.52 -0.3
1,178,485 + CA264_05090 0.52 -0.0
1,178,485 + CA264_05090 0.52 -0.4
1,178,485 + CA264_05090 0.52 -0.5
1,178,486 - CA264_05090 0.52 -0.6
1,178,625 + CA264_05090 0.66 +0.1
1,178,692 + CA264_05090 0.73 -0.1
1,178,693 - CA264_05090 0.73 +0.1
1,178,760 - CA264_05090 0.79 +0.1
1,178,760 - CA264_05090 0.79 +0.8
1,178,792 - CA264_05090 0.83 -1.3
1,178,795 + CA264_05090 0.83 -0.2
1,178,796 - CA264_05090 0.83 -0.4
1,178,802 + CA264_05090 0.84 -0.2
1,178,970 + +0.0
1,179,003 + +1.2
1,179,003 + -0.4
1,179,004 - +0.6
1,179,041 + +1.6
1,179,045 - -0.4
1,179,085 - +0.1
1,179,209 + -0.2
1,179,210 - -0.0
1,179,360 + CA264_05095 0.11 -0.4
1,179,361 - CA264_05095 0.11 -0.8
1,179,372 - CA264_05095 0.12 -1.2
1,179,450 - CA264_05095 0.18 -0.6
1,179,481 + CA264_05095 0.20 -0.8
1,179,481 + CA264_05095 0.20 -0.0
1,179,482 - CA264_05095 0.20 -0.9
1,179,528 - CA264_05095 0.24 +0.1
1,179,588 + CA264_05095 0.28 -0.5
1,179,588 + CA264_05095 0.28 -0.3
1,179,617 + CA264_05095 0.30 +1.0
1,179,618 - CA264_05095 0.30 -0.1
1,179,679 - CA264_05095 0.35 -0.4
1,179,679 - CA264_05095 0.35 +0.3
1,179,774 + CA264_05095 0.42 -0.1
1,179,830 + CA264_05095 0.46 +0.6
1,179,837 + CA264_05095 0.47 -0.1
1,179,838 - CA264_05095 0.47 +0.9
1,179,887 + CA264_05095 0.50 -1.6
1,179,941 + CA264_05095 0.54 -1.4
1,179,942 - CA264_05095 0.54 -0.2
1,179,981 + CA264_05095 0.57 +0.2
1,180,148 + CA264_05095 0.70 -0.7
1,180,174 + CA264_05095 0.72 -0.0
1,180,181 - CA264_05095 0.72 -1.1
1,180,228 + CA264_05095 0.76 +0.2
1,180,228 + CA264_05095 0.76 -1.3
1,180,229 - CA264_05095 0.76 +1.0
1,180,269 - CA264_05095 0.79 -0.6
1,180,269 - CA264_05095 0.79 -0.4
1,180,270 + CA264_05095 0.79 +0.4
1,180,271 - CA264_05095 0.79 -0.1
1,180,271 - CA264_05095 0.79 -0.6
1,180,271 - CA264_05095 0.79 +0.1
1,180,324 - CA264_05095 0.83 -0.1
1,180,330 - CA264_05095 0.83 -0.7
1,180,358 + CA264_05095 0.85 -0.8
1,180,358 + CA264_05095 0.85 -0.6
1,180,413 - CA264_05095 0.90 -1.0
1,180,455 - -0.7
1,180,492 + -0.4
1,180,492 + -0.3
1,180,492 + -0.1
1,180,509 + -0.6
1,180,509 + -0.5
1,180,565 - +1.5
1,180,602 + -0.2
1,180,603 - +0.4
1,180,604 + -0.3
1,180,616 + -0.5
1,180,618 + -0.6
1,180,618 + -1.1
1,180,621 - +0.1
1,180,621 - -0.2
1,180,621 - -0.3
1,180,652 + -1.4
1,180,653 - +0.2
1,180,713 + +0.5
1,180,714 - +0.5
1,180,717 - +0.2
1,180,718 + -0.1
1,180,718 + +0.1
1,180,719 - +0.9
1,180,726 + -0.0
1,180,727 - +1.0
1,180,727 - -0.5
1,180,727 - +0.1
1,180,727 - -0.1
1,180,808 - -0.1
1,180,884 + -1.5
1,180,888 + +0.1
1,180,890 + -0.5
1,180,891 - -0.3
1,180,898 + -0.5
1,180,899 - +0.5
1,180,962 + CA264_05100 0.15 -1.5
1,180,962 + CA264_05100 0.15 +1.2
1,180,981 + CA264_05100 0.18 -0.6
1,180,984 + CA264_05100 0.18 -0.4
1,181,046 + CA264_05100 0.29 +0.3
1,181,103 + CA264_05100 0.39 -0.4
1,181,103 + CA264_05100 0.39 +0.3
1,181,104 - CA264_05100 0.39 -1.3
1,181,160 + CA264_05100 0.49 -1.6
1,181,167 + CA264_05100 0.50 -0.4
1,181,168 - CA264_05100 0.50 +0.0
1,181,280 - CA264_05100 0.69 +0.1
1,181,280 - +0.6
1,181,283 + CA264_05100 0.70 -0.6
1,181,284 - CA264_05100 0.70 -0.2
1,181,284 - CA264_05100 0.70 -0.9
1,181,284 - CA264_05100 0.70 -0.4
1,181,284 - CA264_05100 0.70 -0.0
1,181,284 - CA264_05100 0.70 -0.5
1,181,285 + CA264_05100 0.70 +0.1
1,181,286 - CA264_05100 0.70 -0.1
1,181,288 + CA264_05100 0.71 -0.5
1,181,288 + CA264_05100 0.71 -0.0
1,181,288 + CA264_05100 0.71 +0.0
1,181,288 + CA264_05100 0.71 -0.3
1,181,289 - CA264_05100 0.71 +0.1
1,181,289 - CA264_05100 0.71 -0.9
1,181,289 - CA264_05100 0.71 -0.5
1,181,289 - CA264_05100 0.71 -1.2
1,181,300 + CA264_05100 0.73 -1.9
1,181,304 - CA264_05100 0.73 -0.3
1,181,321 + CA264_05100 0.76 +0.8
1,181,321 + CA264_05100 0.76 -0.1
1,181,323 + CA264_05100 0.77 -1.4
1,181,367 + CA264_05100 0.84 -0.4
1,181,372 + CA264_05100 0.85 +0.0
1,181,437 + +0.1
1,181,454 + -0.3
1,181,454 + -0.5
1,181,454 + +0.2
1,181,455 - -0.8
1,181,476 - -1.2
1,181,476 - -0.5
1,181,477 + -1.1
1,181,477 + +0.0
1,181,478 - -0.4
1,181,478 - +0.1
1,181,478 - +0.3
1,181,478 - -1.0
1,181,539 + CA264_05105 0.12 -1.6
1,181,540 - CA264_05105 0.12 -0.5

Or see this region's nucleotide sequence