Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04380 and CA264_04385 are separated by 287 nucleotides CA264_04385 and CA264_04390 are separated by 305 nucleotides
CA264_04380: CA264_04380 - response regulator, at 1,013,884 to 1,015,050
_04380
CA264_04385: CA264_04385 - hypothetical protein, at 1,015,338 to 1,015,808
_04385
CA264_04390: CA264_04390 - ABC transporter permease, at 1,016,114 to 1,016,929
_04390
Position (kb)
1015
1016 Strain fitness (log2 ratio)
-2
-1
0
1 at 1014.469 kb on - strand, within CA264_04380 at 1014.557 kb on - strand, within CA264_04380 at 1014.557 kb on - strand, within CA264_04380 at 1014.557 kb on - strand, within CA264_04380 at 1014.627 kb on + strand, within CA264_04380 at 1014.627 kb on + strand, within CA264_04380 at 1014.631 kb on + strand, within CA264_04380 at 1014.632 kb on - strand, within CA264_04380 at 1014.819 kb on + strand, within CA264_04380 at 1014.820 kb on - strand, within CA264_04380 at 1014.820 kb on - strand, within CA264_04380 at 1014.823 kb on - strand, within CA264_04380 at 1014.841 kb on + strand, within CA264_04380 at 1014.891 kb on + strand, within CA264_04380 at 1014.891 kb on + strand, within CA264_04380 at 1014.974 kb on + strand at 1014.974 kb on + strand at 1014.974 kb on + strand at 1014.975 kb on - strand at 1015.031 kb on - strand at 1015.050 kb on + strand at 1015.050 kb on + strand at 1015.060 kb on + strand at 1015.072 kb on + strand at 1015.076 kb on + strand at 1015.076 kb on + strand at 1015.077 kb on - strand at 1015.077 kb on - strand at 1015.078 kb on + strand at 1015.079 kb on - strand at 1015.083 kb on - strand at 1015.139 kb on - strand at 1015.148 kb on - strand at 1015.193 kb on - strand at 1015.198 kb on + strand at 1015.229 kb on + strand at 1015.230 kb on - strand at 1015.256 kb on + strand at 1015.256 kb on + strand at 1015.257 kb on - strand at 1015.257 kb on - strand at 1015.339 kb on + strand at 1015.340 kb on - strand at 1015.367 kb on + strand at 1015.367 kb on + strand at 1015.367 kb on + strand at 1015.368 kb on - strand at 1015.368 kb on - strand at 1015.368 kb on - strand at 1015.368 kb on - strand at 1015.372 kb on - strand at 1015.445 kb on - strand, within CA264_04385 at 1015.456 kb on + strand, within CA264_04385 at 1015.456 kb on + strand, within CA264_04385 at 1015.457 kb on - strand, within CA264_04385 at 1015.486 kb on - strand, within CA264_04385 at 1015.511 kb on + strand, within CA264_04385 at 1015.512 kb on - strand, within CA264_04385 at 1015.526 kb on - strand, within CA264_04385 at 1015.790 kb on + strand at 1015.798 kb on - strand at 1015.875 kb on - strand at 1015.875 kb on - strand at 1015.875 kb on - strand at 1015.875 kb on - strand at 1015.876 kb on + strand at 1015.876 kb on + strand at 1015.876 kb on + strand at 1015.876 kb on + strand at 1015.877 kb on + strand at 1015.880 kb on - strand at 1015.880 kb on - strand at 1015.897 kb on - strand at 1015.926 kb on + strand at 1015.991 kb on + strand at 1015.993 kb on + strand at 1015.996 kb on - strand at 1015.996 kb on - strand at 1015.998 kb on - strand at 1016.021 kb on + strand at 1016.030 kb on - strand at 1016.037 kb on + strand at 1016.071 kb on - strand at 1016.112 kb on + strand at 1016.113 kb on - strand at 1016.121 kb on + strand at 1016.140 kb on + strand at 1016.160 kb on - strand at 1016.285 kb on + strand, within CA264_04390 at 1016.285 kb on + strand, within CA264_04390 at 1016.285 kb on + strand, within CA264_04390 at 1016.286 kb on - strand, within CA264_04390 at 1016.286 kb on - strand, within CA264_04390 at 1016.292 kb on + strand, within CA264_04390 at 1016.423 kb on - strand, within CA264_04390 at 1016.561 kb on - strand, within CA264_04390 at 1016.599 kb on + strand, within CA264_04390 at 1016.600 kb on - strand, within CA264_04390 at 1016.621 kb on + strand, within CA264_04390 at 1016.621 kb on + strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.662 kb on - strand, within CA264_04390 at 1016.662 kb on - strand, within CA264_04390 at 1016.693 kb on + strand, within CA264_04390 at 1016.748 kb on + strand, within CA264_04390 at 1016.770 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.793 kb on - strand, within CA264_04390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 1,014,469 - CA264_04380 0.50 +0.4 1,014,557 - CA264_04380 0.58 +0.2 1,014,557 - CA264_04380 0.58 -0.4 1,014,557 - CA264_04380 0.58 -1.9 1,014,627 + CA264_04380 0.64 -0.1 1,014,627 + CA264_04380 0.64 +1.7 1,014,631 + CA264_04380 0.64 -0.3 1,014,632 - CA264_04380 0.64 -0.6 1,014,819 + CA264_04380 0.80 -1.7 1,014,820 - CA264_04380 0.80 -0.8 1,014,820 - CA264_04380 0.80 +0.2 1,014,823 - CA264_04380 0.80 +0.1 1,014,841 + CA264_04380 0.82 +0.1 1,014,891 + CA264_04380 0.86 -0.5 1,014,891 + CA264_04380 0.86 +0.7 1,014,974 + -0.2 1,014,974 + +0.3 1,014,974 + -0.4 1,014,975 - -0.1 1,015,031 - -0.5 1,015,050 + -0.4 1,015,050 + -0.5 1,015,060 + -0.6 1,015,072 + -0.5 1,015,076 + -0.3 1,015,076 + -0.1 1,015,077 - -0.6 1,015,077 - -0.1 1,015,078 + +0.0 1,015,079 - +0.0 1,015,083 - -0.1 1,015,139 - -0.0 1,015,148 - +0.1 1,015,193 - -0.6 1,015,198 + -0.8 1,015,229 + -0.4 1,015,230 - +1.5 1,015,256 + -0.0 1,015,256 + -2.6 1,015,257 - +0.2 1,015,257 - -0.2 1,015,339 + -0.7 1,015,340 - +0.5 1,015,367 + -0.2 1,015,367 + -1.3 1,015,367 + +0.3 1,015,368 - -0.0 1,015,368 - -1.3 1,015,368 - -0.2 1,015,368 - -1.6 1,015,372 - +0.6 1,015,445 - CA264_04385 0.23 -0.6 1,015,456 + CA264_04385 0.25 -0.7 1,015,456 + CA264_04385 0.25 +0.2 1,015,457 - CA264_04385 0.25 +0.3 1,015,486 - CA264_04385 0.31 +0.3 1,015,511 + CA264_04385 0.37 +0.0 1,015,512 - CA264_04385 0.37 +0.4 1,015,526 - CA264_04385 0.40 -0.7 1,015,790 + -1.6 1,015,798 - -0.3 1,015,875 - +0.3 1,015,875 - +0.5 1,015,875 - +0.8 1,015,875 - -0.2 1,015,876 + -0.5 1,015,876 + -0.2 1,015,876 + +1.7 1,015,876 + -0.3 1,015,877 + -0.9 1,015,880 - -0.2 1,015,880 - +0.4 1,015,897 - +0.1 1,015,926 + -0.3 1,015,991 + -0.5 1,015,993 + -0.4 1,015,996 - -0.2 1,015,996 - +0.1 1,015,998 - -0.2 1,016,021 + -0.0 1,016,030 - +0.7 1,016,037 + +0.3 1,016,071 - -0.1 1,016,112 + -0.2 1,016,113 - -1.0 1,016,121 + -0.4 1,016,140 + -1.2 1,016,160 - -0.8 1,016,285 + CA264_04390 0.21 -0.7 1,016,285 + CA264_04390 0.21 -1.2 1,016,285 + CA264_04390 0.21 -0.9 1,016,286 - CA264_04390 0.21 -0.5 1,016,286 - CA264_04390 0.21 -0.8 1,016,292 + CA264_04390 0.22 -0.1 1,016,423 - CA264_04390 0.38 -1.8 1,016,561 - CA264_04390 0.55 -2.7 1,016,599 + CA264_04390 0.59 -0.5 1,016,600 - CA264_04390 0.60 -0.5 1,016,621 + CA264_04390 0.62 -0.6 1,016,621 + CA264_04390 0.62 -0.6 1,016,622 - CA264_04390 0.62 -2.5 1,016,622 - CA264_04390 0.62 -0.4 1,016,622 - CA264_04390 0.62 -1.3 1,016,622 - CA264_04390 0.62 +1.1 1,016,622 - CA264_04390 0.62 -0.9 1,016,661 + CA264_04390 0.67 -1.3 1,016,661 + CA264_04390 0.67 -1.1 1,016,661 + CA264_04390 0.67 -1.8 1,016,662 - CA264_04390 0.67 +0.2 1,016,662 - CA264_04390 0.67 -0.7 1,016,693 + CA264_04390 0.71 -1.9 1,016,748 + CA264_04390 0.78 -2.1 1,016,770 + CA264_04390 0.80 +0.4 1,016,792 + CA264_04390 0.83 -0.7 1,016,792 + CA264_04390 0.83 -0.6 1,016,792 + CA264_04390 0.83 -1.0 1,016,792 + CA264_04390 0.83 -0.7 1,016,793 - CA264_04390 0.83 -0.3
Or see this region's nucleotide sequence