Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03465

Experiment: m.b. Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03455 and CA264_03460 are separated by 133 nucleotidesCA264_03460 and CA264_03465 are separated by 82 nucleotidesCA264_03465 and CA264_03470 are separated by 303 nucleotides CA264_03455: CA264_03455 - hypothetical protein, at 806,623 to 807,945 _03455 CA264_03460: CA264_03460 - hypothetical protein, at 808,079 to 808,501 _03460 CA264_03465: CA264_03465 - hypothetical protein, at 808,584 to 809,066 _03465 CA264_03470: CA264_03470 - short-chain dehydrogenase, at 809,370 to 810,140 _03470 Position (kb) 808 809 810Strain fitness (log2 ratio) -2 -1 0 1at 807.584 kb on + strand, within CA264_03455at 807.585 kb on - strand, within CA264_03455at 807.587 kb on - strand, within CA264_03455at 807.603 kb on - strand, within CA264_03455at 807.624 kb on + strand, within CA264_03455at 807.625 kb on - strand, within CA264_03455at 807.627 kb on - strand, within CA264_03455at 807.627 kb on - strand, within CA264_03455at 807.627 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.633 kb on + strand, within CA264_03455at 807.634 kb on - strand, within CA264_03455at 807.677 kb on + strand, within CA264_03455at 807.678 kb on - strand, within CA264_03455at 807.678 kb on - strand, within CA264_03455at 807.772 kb on + strand, within CA264_03455at 807.800 kb on + strand, within CA264_03455at 807.801 kb on - strand, within CA264_03455at 807.801 kb on - strand, within CA264_03455at 807.890 kb on - strandat 807.967 kb on - strandat 807.981 kb on - strandat 808.029 kb on + strandat 808.048 kb on + strandat 808.080 kb on + strandat 808.080 kb on + strandat 808.181 kb on + strand, within CA264_03460at 808.182 kb on - strand, within CA264_03460at 808.265 kb on - strand, within CA264_03460at 808.323 kb on + strand, within CA264_03460at 808.323 kb on + strand, within CA264_03460at 808.324 kb on - strand, within CA264_03460at 808.324 kb on - strand, within CA264_03460at 808.351 kb on + strand, within CA264_03460at 808.380 kb on + strand, within CA264_03460at 808.380 kb on + strand, within CA264_03460at 808.389 kb on - strand, within CA264_03460at 808.439 kb on + strand, within CA264_03460at 808.515 kb on - strandat 808.515 kb on - strandat 808.523 kb on + strandat 808.524 kb on - strandat 808.524 kb on - strandat 808.551 kb on + strandat 808.551 kb on + strandat 808.644 kb on + strand, within CA264_03465at 808.645 kb on - strand, within CA264_03465at 808.659 kb on - strand, within CA264_03465at 808.706 kb on - strand, within CA264_03465at 808.762 kb on - strand, within CA264_03465at 808.817 kb on + strand, within CA264_03465at 808.818 kb on - strand, within CA264_03465at 808.821 kb on + strand, within CA264_03465at 808.855 kb on + strand, within CA264_03465at 808.956 kb on - strand, within CA264_03465at 808.985 kb on + strand, within CA264_03465at 809.068 kb on + strandat 809.068 kb on + strandat 809.069 kb on - strandat 809.072 kb on + strandat 809.072 kb on + strandat 809.190 kb on + strandat 809.215 kb on + strandat 809.305 kb on + strandat 809.316 kb on + strandat 809.316 kb on + strandat 809.338 kb on + strandat 809.383 kb on + strandat 809.401 kb on + strandat 809.589 kb on + strand, within CA264_03470at 809.605 kb on + strand, within CA264_03470at 809.683 kb on - strand, within CA264_03470at 809.709 kb on + strand, within CA264_03470at 809.710 kb on - strand, within CA264_03470at 809.765 kb on - strand, within CA264_03470at 809.904 kb on + strand, within CA264_03470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM
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807,584 + CA264_03455 0.73 -2.2
807,585 - CA264_03455 0.73 +1.0
807,587 - CA264_03455 0.73 +0.1
807,603 - CA264_03455 0.74 -0.4
807,624 + CA264_03455 0.76 -0.4
807,625 - CA264_03455 0.76 +1.3
807,627 - CA264_03455 0.76 -0.5
807,627 - CA264_03455 0.76 -0.0
807,627 - CA264_03455 0.76 +0.7
807,630 - CA264_03455 0.76 +0.1
807,630 - CA264_03455 0.76 +0.1
807,630 - CA264_03455 0.76 -0.1
807,630 - CA264_03455 0.76 +1.5
807,633 + CA264_03455 0.76 +0.3
807,634 - CA264_03455 0.76 -0.6
807,677 + CA264_03455 0.80 +0.4
807,678 - CA264_03455 0.80 +0.4
807,678 - CA264_03455 0.80 -1.3
807,772 + CA264_03455 0.87 -1.2
807,800 + CA264_03455 0.89 +0.8
807,801 - CA264_03455 0.89 -0.6
807,801 - CA264_03455 0.89 -1.0
807,890 - -0.4
807,967 - +0.1
807,981 - +0.1
808,029 + -0.2
808,048 + +0.0
808,080 + +0.2
808,080 + -0.2
808,181 + CA264_03460 0.24 -0.1
808,182 - CA264_03460 0.24 -0.2
808,265 - CA264_03460 0.44 -0.0
808,323 + CA264_03460 0.58 -0.4
808,323 + CA264_03460 0.58 -0.6
808,324 - CA264_03460 0.58 -0.4
808,324 - CA264_03460 0.58 -1.0
808,351 + CA264_03460 0.64 +0.9
808,380 + CA264_03460 0.71 -0.8
808,380 + CA264_03460 0.71 -1.4
808,389 - CA264_03460 0.73 +0.6
808,439 + CA264_03460 0.85 +0.8
808,515 - -0.2
808,515 - +1.0
808,523 + -0.5
808,524 - -0.0
808,524 - -0.2
808,551 + +0.2
808,551 + -0.7
808,644 + CA264_03465 0.12 -0.6
808,645 - CA264_03465 0.13 -0.3
808,659 - CA264_03465 0.16 -1.0
808,706 - CA264_03465 0.25 +0.6
808,762 - CA264_03465 0.37 -0.7
808,817 + CA264_03465 0.48 +0.4
808,818 - CA264_03465 0.48 -0.3
808,821 + CA264_03465 0.49 -2.1
808,855 + CA264_03465 0.56 +0.4
808,956 - CA264_03465 0.77 -0.7
808,985 + CA264_03465 0.83 +0.5
809,068 + +0.2
809,068 + +0.6
809,069 - -0.3
809,072 + +0.0
809,072 + -0.0
809,190 + -1.4
809,215 + -0.3
809,305 + -0.2
809,316 + -0.6
809,316 + -0.9
809,338 + -0.1
809,383 + +0.4
809,401 + +0.1
809,589 + CA264_03470 0.28 -0.2
809,605 + CA264_03470 0.30 +0.7
809,683 - CA264_03470 0.41 +0.2
809,709 + CA264_03470 0.44 -0.0
809,710 - CA264_03470 0.44 -1.4
809,765 - CA264_03470 0.51 -0.6
809,904 + CA264_03470 0.69 +0.4

Or see this region's nucleotide sequence