Experiment: m.b. Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02380 and CA264_02385 are separated by 212 nucleotides CA264_02385 and CA264_02390 are separated by 72 nucleotides CA264_02390 and CA264_02395 overlap by 8 nucleotides
CA264_02380: CA264_02380 - homoserine dehydrogenase, at 550,252 to 551,511
_02380
CA264_02385: CA264_02385 - hypothetical protein, at 551,724 to 552,410
_02385
CA264_02390: CA264_02390 - diaminopimelate decarboxylase, at 552,483 to 553,625
_02390
CA264_02395: CA264_02395 - aspartate kinase, at 553,618 to 554,949
_02395
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.537 kb on - strand at 551.564 kb on - strand at 551.568 kb on - strand at 551.574 kb on - strand at 551.672 kb on - strand at 551.695 kb on + strand at 551.695 kb on + strand at 551.696 kb on - strand at 551.771 kb on - strand at 551.792 kb on + strand at 551.793 kb on - strand, within CA264_02385 at 551.793 kb on - strand, within CA264_02385 at 551.829 kb on - strand, within CA264_02385 at 551.836 kb on - strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.847 kb on + strand, within CA264_02385 at 551.953 kb on - strand, within CA264_02385 at 551.954 kb on + strand, within CA264_02385 at 552.085 kb on + strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.091 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.294 kb on + strand, within CA264_02385 at 552.414 kb on - strand at 552.414 kb on - strand at 552.468 kb on + strand at 552.470 kb on + strand at 552.490 kb on + strand at 552.490 kb on + strand at 552.521 kb on - strand at 552.688 kb on - strand, within CA264_02390 at 552.720 kb on + strand, within CA264_02390 at 552.781 kb on + strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 553.014 kb on + strand, within CA264_02390 at 553.022 kb on + strand, within CA264_02390 at 553.035 kb on - strand, within CA264_02390 at 553.102 kb on - strand, within CA264_02390 at 553.183 kb on + strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.187 kb on + strand, within CA264_02390 at 553.188 kb on - strand, within CA264_02390 at 553.287 kb on - strand, within CA264_02390 at 553.333 kb on - strand, within CA264_02390 at 553.495 kb on + strand, within CA264_02390 at 553.571 kb on - strand at 553.586 kb on + strand at 553.620 kb on - strand at 553.693 kb on - strand at 553.696 kb on + strand at 553.697 kb on - strand at 553.801 kb on - strand, within CA264_02395 at 553.821 kb on + strand, within CA264_02395 at 553.821 kb on + strand, within CA264_02395 at 553.822 kb on - strand, within CA264_02395 at 553.840 kb on + strand, within CA264_02395 at 553.847 kb on - strand, within CA264_02395 at 553.874 kb on - strand, within CA264_02395 at 553.893 kb on + strand, within CA264_02395 at 553.894 kb on - strand, within CA264_02395 at 554.056 kb on + strand, within CA264_02395 at 554.057 kb on - strand, within CA264_02395 at 554.206 kb on + strand, within CA264_02395 at 554.258 kb on - strand, within CA264_02395 at 554.352 kb on - strand, within CA264_02395 at 554.408 kb on + strand, within CA264_02395 at 554.409 kb on - strand, within CA264_02395 at 554.409 kb on - strand, within CA264_02395 at 554.477 kb on + strand, within CA264_02395 at 554.477 kb on + strand, within CA264_02395 at 554.478 kb on - strand, within CA264_02395 at 554.565 kb on - strand, within CA264_02395
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.3 mM remove 551,537 - +0.0 551,564 - -0.7 551,568 - -0.2 551,574 - -0.8 551,672 - -1.5 551,695 + -0.8 551,695 + -0.0 551,696 - -0.0 551,771 - +0.2 551,792 + -0.2 551,793 - CA264_02385 0.10 -0.3 551,793 - CA264_02385 0.10 -0.6 551,829 - CA264_02385 0.15 -0.1 551,836 - CA264_02385 0.16 -0.7 551,837 + CA264_02385 0.16 +2.0 551,837 + CA264_02385 0.16 -0.4 551,841 + CA264_02385 0.17 +0.1 551,841 + CA264_02385 0.17 +0.5 551,842 - CA264_02385 0.17 -0.9 551,842 - CA264_02385 0.17 -0.2 551,842 - CA264_02385 0.17 -0.1 551,847 + CA264_02385 0.18 +0.0 551,953 - CA264_02385 0.33 +0.6 551,954 + CA264_02385 0.33 +2.3 552,085 + CA264_02385 0.53 +0.3 552,086 - CA264_02385 0.53 +0.9 552,086 - CA264_02385 0.53 -0.3 552,090 + CA264_02385 0.53 -0.7 552,090 + CA264_02385 0.53 -0.3 552,091 - CA264_02385 0.53 -0.1 552,152 - CA264_02385 0.62 -1.8 552,152 - CA264_02385 0.62 -1.0 552,294 + CA264_02385 0.83 -0.2 552,414 - -0.6 552,414 - +1.0 552,468 + -0.8 552,470 + -0.3 552,490 + -0.4 552,490 + -1.6 552,521 - +0.1 552,688 - CA264_02390 0.18 +0.1 552,720 + CA264_02390 0.21 -0.7 552,781 + CA264_02390 0.26 -0.1 552,932 - CA264_02390 0.39 -0.5 552,932 - CA264_02390 0.39 +0.2 552,932 - CA264_02390 0.39 -0.4 553,014 + CA264_02390 0.46 +0.1 553,022 + CA264_02390 0.47 -0.6 553,035 - CA264_02390 0.48 +0.3 553,102 - CA264_02390 0.54 +1.0 553,183 + CA264_02390 0.61 -0.9 553,184 - CA264_02390 0.61 +1.7 553,184 - CA264_02390 0.61 -0.3 553,187 + CA264_02390 0.62 +0.1 553,188 - CA264_02390 0.62 -0.1 553,287 - CA264_02390 0.70 +0.1 553,333 - CA264_02390 0.74 -0.2 553,495 + CA264_02390 0.89 +0.3 553,571 - -0.8 553,586 + -0.3 553,620 - +0.0 553,693 - -0.0 553,696 + +0.5 553,697 - +0.6 553,801 - CA264_02395 0.14 -0.1 553,821 + CA264_02395 0.15 -0.9 553,821 + CA264_02395 0.15 -0.9 553,822 - CA264_02395 0.15 -0.0 553,840 + CA264_02395 0.17 +0.6 553,847 - CA264_02395 0.17 -0.8 553,874 - CA264_02395 0.19 -0.5 553,893 + CA264_02395 0.21 +1.2 553,894 - CA264_02395 0.21 -0.3 554,056 + CA264_02395 0.33 -0.3 554,057 - CA264_02395 0.33 -0.5 554,206 + CA264_02395 0.44 +0.6 554,258 - CA264_02395 0.48 -0.6 554,352 - CA264_02395 0.55 +0.3 554,408 + CA264_02395 0.59 -0.3 554,409 - CA264_02395 0.59 -0.7 554,409 - CA264_02395 0.59 -0.0 554,477 + CA264_02395 0.64 -0.5 554,477 + CA264_02395 0.64 -0.4 554,478 - CA264_02395 0.65 +0.7 554,565 - CA264_02395 0.71 -0.4
Or see this region's nucleotide sequence