Strain Fitness in Agrobacterium fabrum C58 around Atu6002

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6001 and Atu6002 are separated by 455 nucleotides Atu6001: Atu6001 - 5 protein, at 2,389 to 3,072 Atu6001 Atu6002: Atu6002 - C protein, at 3,528 to 5,099 Atu6002 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.595 kb on - strand, within Atu6001at 2.597 kb on - strand, within Atu6001at 2.635 kb on - strand, within Atu6001at 2.649 kb on + strand, within Atu6001at 2.649 kb on + strand, within Atu6001at 2.649 kb on + strand, within Atu6001at 2.657 kb on - strand, within Atu6001at 2.659 kb on + strand, within Atu6001at 2.756 kb on - strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.758 kb on + strand, within Atu6001at 2.763 kb on + strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.766 kb on - strand, within Atu6001at 2.768 kb on + strand, within Atu6001at 2.768 kb on + strand, within Atu6001at 2.768 kb on + strand, within Atu6001at 2.776 kb on - strand, within Atu6001at 2.781 kb on + strand, within Atu6001at 2.809 kb on + strand, within Atu6001at 2.809 kb on + strand, within Atu6001at 3.237 kb on - strandat 3.427 kb on + strandat 3.466 kb on + strandat 3.541 kb on - strandat 3.562 kb on - strandat 3.590 kb on - strandat 3.628 kb on - strandat 3.707 kb on - strand, within Atu6002at 3.753 kb on + strand, within Atu6002at 3.799 kb on - strand, within Atu6002at 3.819 kb on - strand, within Atu6002at 3.826 kb on - strand, within Atu6002at 3.833 kb on + strand, within Atu6002at 3.842 kb on + strand, within Atu6002at 3.842 kb on + strand, within Atu6002at 3.842 kb on + strand, within Atu6002at 3.850 kb on - strand, within Atu6002at 3.850 kb on - strand, within Atu6002at 3.879 kb on + strand, within Atu6002at 3.882 kb on - strand, within Atu6002at 3.929 kb on + strand, within Atu6002at 3.929 kb on + strand, within Atu6002at 3.937 kb on - strand, within Atu6002at 3.988 kb on - strand, within Atu6002at 3.989 kb on - strand, within Atu6002at 3.989 kb on - strand, within Atu6002at 3.999 kb on + strand, within Atu6002at 4.027 kb on + strand, within Atu6002at 4.041 kb on - strand, within Atu6002at 4.043 kb on + strand, within Atu6002at 4.043 kb on + strand, within Atu6002at 4.043 kb on + strand, within Atu6002at 4.043 kb on + strand, within Atu6002at 4.051 kb on - strand, within Atu6002at 4.051 kb on - strand, within Atu6002at 4.071 kb on - strand, within Atu6002at 4.075 kb on - strand, within Atu6002at 4.188 kb on + strand, within Atu6002at 4.276 kb on - strand, within Atu6002at 4.280 kb on + strand, within Atu6002at 4.331 kb on - strand, within Atu6002at 4.338 kb on + strand, within Atu6002at 4.343 kb on + strand, within Atu6002at 4.401 kb on - strand, within Atu6002at 4.403 kb on - strand, within Atu6002at 4.414 kb on + strand, within Atu6002at 4.414 kb on + strand, within Atu6002at 4.416 kb on + strand, within Atu6002at 4.416 kb on + strand, within Atu6002at 4.420 kb on - strand, within Atu6002at 4.420 kb on - strand, within Atu6002at 4.422 kb on - strand, within Atu6002at 4.422 kb on - strand, within Atu6002at 4.422 kb on - strand, within Atu6002at 4.434 kb on - strand, within Atu6002at 4.452 kb on + strand, within Atu6002at 4.456 kb on - strand, within Atu6002at 4.456 kb on - strand, within Atu6002at 4.476 kb on - strand, within Atu6002at 4.476 kb on - strand, within Atu6002at 4.481 kb on - strand, within Atu6002at 4.494 kb on + strand, within Atu6002at 4.494 kb on + strand, within Atu6002at 4.503 kb on + strand, within Atu6002at 4.505 kb on + strand, within Atu6002at 4.510 kb on + strand, within Atu6002at 4.510 kb on + strand, within Atu6002at 4.513 kb on - strand, within Atu6002at 4.515 kb on + strand, within Atu6002at 4.515 kb on + strand, within Atu6002at 4.518 kb on - strand, within Atu6002at 4.518 kb on - strand, within Atu6002at 4.518 kb on - strand, within Atu6002at 4.518 kb on - strand, within Atu6002at 4.522 kb on + strand, within Atu6002at 4.523 kb on - strand, within Atu6002at 4.523 kb on - strand, within Atu6002at 4.537 kb on - strand, within Atu6002at 4.544 kb on - strand, within Atu6002at 4.591 kb on + strand, within Atu6002at 4.591 kb on - strand, within Atu6002at 4.599 kb on - strand, within Atu6002at 4.599 kb on - strand, within Atu6002at 4.615 kb on + strand, within Atu6002at 4.626 kb on + strand, within Atu6002at 4.676 kb on + strand, within Atu6002at 4.684 kb on + strand, within Atu6002at 4.692 kb on - strand, within Atu6002at 4.692 kb on - strand, within Atu6002at 4.710 kb on - strand, within Atu6002at 4.839 kb on + strand, within Atu6002at 4.839 kb on + strand, within Atu6002at 4.839 kb on + strand, within Atu6002at 4.847 kb on - strand, within Atu6002at 4.847 kb on - strand, within Atu6002at 4.881 kb on + strand, within Atu6002at 4.894 kb on + strand, within Atu6002at 4.902 kb on + strand, within Atu6002at 4.906 kb on + strand, within Atu6002at 4.907 kb on - strand, within Atu6002at 4.913 kb on + strand, within Atu6002at 4.969 kb on - strandat 4.970 kb on + strandat 4.984 kb on + strandat 4.992 kb on - strandat 5.027 kb on + strandat 5.075 kb on + strandat 5.083 kb on + strandat 5.083 kb on + strandat 5.115 kb on + strandat 5.122 kb on - strandat 5.123 kb on - strandat 5.192 kb on - strandat 5.198 kb on + strandat 5.198 kb on + strandat 5.216 kb on + strandat 5.221 kb on + strandat 5.336 kb on - strandat 5.435 kb on - strandat 5.454 kb on + strandat 5.559 kb on + strandat 5.590 kb on + strandat 5.590 kb on + strandat 5.663 kb on - strandat 5.683 kb on - strandat 5.693 kb on + strandat 5.710 kb on - strandat 5.739 kb on + strandat 5.820 kb on - strandat 5.820 kb on - strandat 5.856 kb on + strandat 5.875 kb on - strandat 5.883 kb on - strandat 5.922 kb on - strandat 5.934 kb on - strandat 5.935 kb on + strandat 5.946 kb on + strandat 5.954 kb on - strandat 5.954 kb on - strandat 5.958 kb on + strandat 5.961 kb on - strandat 6.025 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,595 - Atu6001 0.30 +0.5
2,597 - Atu6001 0.30 -1.0
2,635 - Atu6001 0.36 -0.0
2,649 + Atu6001 0.38 +0.1
2,649 + Atu6001 0.38 -1.5
2,649 + Atu6001 0.38 +0.0
2,657 - Atu6001 0.39 -0.3
2,659 + Atu6001 0.39 +1.0
2,756 - Atu6001 0.54 -0.9
2,758 + Atu6001 0.54 +0.4
2,758 + Atu6001 0.54 +0.0
2,758 + Atu6001 0.54 +0.4
2,758 + Atu6001 0.54 +1.3
2,758 + Atu6001 0.54 -1.4
2,758 + Atu6001 0.54 -0.4
2,758 + Atu6001 0.54 -2.0
2,758 + Atu6001 0.54 -0.4
2,763 + Atu6001 0.55 +0.5
2,766 - Atu6001 0.55 -1.0
2,766 - Atu6001 0.55 -0.1
2,766 - Atu6001 0.55 +0.8
2,766 - Atu6001 0.55 +0.5
2,766 - Atu6001 0.55 -2.7
2,766 - Atu6001 0.55 -0.5
2,766 - Atu6001 0.55 +1.0
2,766 - Atu6001 0.55 +0.3
2,768 + Atu6001 0.55 -0.7
2,768 + Atu6001 0.55 +0.2
2,768 + Atu6001 0.55 +2.3
2,776 - Atu6001 0.57 -0.2
2,781 + Atu6001 0.57 -0.5
2,809 + Atu6001 0.61 +0.7
2,809 + Atu6001 0.61 -0.3
3,237 - +0.1
3,427 + -0.4
3,466 + +0.2
3,541 - +0.1
3,562 - -1.0
3,590 - +0.6
3,628 - -0.8
3,707 - Atu6002 0.11 -2.6
3,753 + Atu6002 0.14 -0.1
3,799 - Atu6002 0.17 +0.3
3,819 - Atu6002 0.19 -1.3
3,826 - Atu6002 0.19 -0.6
3,833 + Atu6002 0.19 -0.5
3,842 + Atu6002 0.20 -0.4
3,842 + Atu6002 0.20 -0.2
3,842 + Atu6002 0.20 +0.0
3,850 - Atu6002 0.20 +0.4
3,850 - Atu6002 0.20 -0.2
3,879 + Atu6002 0.22 -0.6
3,882 - Atu6002 0.23 -1.0
3,929 + Atu6002 0.26 +0.6
3,929 + Atu6002 0.26 -0.6
3,937 - Atu6002 0.26 -1.3
3,988 - Atu6002 0.29 +0.0
3,989 - Atu6002 0.29 -0.0
3,989 - Atu6002 0.29 -0.2
3,999 + Atu6002 0.30 +0.3
4,027 + Atu6002 0.32 -0.0
4,041 - Atu6002 0.33 +0.3
4,043 + Atu6002 0.33 -0.3
4,043 + Atu6002 0.33 +1.3
4,043 + Atu6002 0.33 -1.0
4,043 + Atu6002 0.33 -0.2
4,051 - Atu6002 0.33 +0.5
4,051 - Atu6002 0.33 -1.7
4,071 - Atu6002 0.35 +0.1
4,075 - Atu6002 0.35 +0.8
4,188 + Atu6002 0.42 +0.1
4,276 - Atu6002 0.48 -1.0
4,280 + Atu6002 0.48 +0.9
4,331 - Atu6002 0.51 +0.2
4,338 + Atu6002 0.52 +0.2
4,343 + Atu6002 0.52 -0.1
4,401 - Atu6002 0.56 +0.3
4,403 - Atu6002 0.56 -1.6
4,414 + Atu6002 0.56 +0.1
4,414 + Atu6002 0.56 -0.1
4,416 + Atu6002 0.56 +0.0
4,416 + Atu6002 0.56 +0.9
4,420 - Atu6002 0.57 -0.1
4,420 - Atu6002 0.57 -1.0
4,422 - Atu6002 0.57 +0.3
4,422 - Atu6002 0.57 -0.5
4,422 - Atu6002 0.57 -0.7
4,434 - Atu6002 0.58 +0.6
4,452 + Atu6002 0.59 -1.3
4,456 - Atu6002 0.59 +0.8
4,456 - Atu6002 0.59 +0.4
4,476 - Atu6002 0.60 -0.1
4,476 - Atu6002 0.60 +0.2
4,481 - Atu6002 0.61 -1.0
4,494 + Atu6002 0.61 -0.6
4,494 + Atu6002 0.61 -1.2
4,503 + Atu6002 0.62 -0.2
4,505 + Atu6002 0.62 -0.0
4,510 + Atu6002 0.62 -0.7
4,510 + Atu6002 0.62 +0.3
4,513 - Atu6002 0.63 +0.3
4,515 + Atu6002 0.63 -0.4
4,515 + Atu6002 0.63 +1.7
4,518 - Atu6002 0.63 -0.1
4,518 - Atu6002 0.63 -0.5
4,518 - Atu6002 0.63 -2.9
4,518 - Atu6002 0.63 -0.7
4,522 + Atu6002 0.63 +1.3
4,523 - Atu6002 0.63 -0.9
4,523 - Atu6002 0.63 -0.5
4,537 - Atu6002 0.64 -1.2
4,544 - Atu6002 0.65 +0.5
4,591 + Atu6002 0.68 +0.6
4,591 - Atu6002 0.68 -0.9
4,599 - Atu6002 0.68 -0.7
4,599 - Atu6002 0.68 -0.8
4,615 + Atu6002 0.69 +0.2
4,626 + Atu6002 0.70 -2.0
4,676 + Atu6002 0.73 -2.5
4,684 + Atu6002 0.74 -1.0
4,692 - Atu6002 0.74 +0.1
4,692 - Atu6002 0.74 -1.5
4,710 - Atu6002 0.75 -0.6
4,839 + Atu6002 0.83 -0.3
4,839 + Atu6002 0.83 -0.5
4,839 + Atu6002 0.83 -1.0
4,847 - Atu6002 0.84 -1.6
4,847 - Atu6002 0.84 +0.9
4,881 + Atu6002 0.86 -0.8
4,894 + Atu6002 0.87 +0.7
4,902 + Atu6002 0.87 -0.1
4,906 + Atu6002 0.88 +0.5
4,907 - Atu6002 0.88 -0.5
4,913 + Atu6002 0.88 -2.6
4,969 - +0.3
4,970 + +0.8
4,984 + -0.6
4,992 - +0.6
5,027 + +0.4
5,075 + -0.2
5,083 + +0.9
5,083 + -0.7
5,115 + +0.1
5,122 - -0.9
5,123 - -0.6
5,192 - -2.0
5,198 + +0.1
5,198 + +0.4
5,216 + +1.3
5,221 + -1.0
5,336 - +0.3
5,435 - -0.8
5,454 + +0.8
5,559 + -0.3
5,590 + -1.4
5,590 + -0.7
5,663 - -0.0
5,683 - -0.1
5,693 + -0.0
5,710 - -0.3
5,739 + -1.1
5,820 - +0.3
5,820 - -0.3
5,856 + -0.6
5,875 - +0.3
5,883 - +0.8
5,922 - +0.4
5,934 - -0.2
5,935 + +0.1
5,946 + -0.1
5,954 - -0.2
5,954 - -0.6
5,958 + +1.3
5,961 - +1.9
6,025 - -0.3

Or see this region's nucleotide sequence