Strain Fitness in Agrobacterium fabrum C58 around Atu5022

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5020 and Atu5021 overlap by 4 nucleotidesAtu5021 and Atu5022 overlap by 1 nucleotidesAtu5022 and Atu5023 are separated by 301 nucleotides Atu5020: Atu5020 - hypothetical protein, at 20,001 to 21,335 Atu5020 Atu5021: Atu5021 - hypothetical protein, at 21,332 to 22,228 Atu5021 Atu5022: Atu5022 - hypothetical protein, at 22,228 to 24,126 Atu5022 Atu5023: Atu5023 - hypothetical protein, at 24,428 to 26,161 Atu5023 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.230 kb on + strandat 21.233 kb on - strandat 21.250 kb on + strandat 21.308 kb on + strandat 21.313 kb on + strandat 21.316 kb on - strandat 21.316 kb on - strandat 21.410 kb on + strandat 21.418 kb on - strandat 21.434 kb on - strand, within Atu5021at 21.458 kb on - strand, within Atu5021at 21.497 kb on + strand, within Atu5021at 21.505 kb on - strand, within Atu5021at 21.507 kb on + strand, within Atu5021at 21.520 kb on - strand, within Atu5021at 21.520 kb on - strand, within Atu5021at 21.557 kb on - strand, within Atu5021at 21.619 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.652 kb on + strand, within Atu5021at 21.660 kb on - strand, within Atu5021at 21.660 kb on - strand, within Atu5021at 21.684 kb on - strand, within Atu5021at 21.707 kb on + strand, within Atu5021at 21.725 kb on - strand, within Atu5021at 21.766 kb on - strand, within Atu5021at 21.843 kb on - strand, within Atu5021at 21.879 kb on - strand, within Atu5021at 22.128 kb on - strand, within Atu5021at 22.130 kb on - strand, within Atu5021at 22.167 kb on + strandat 22.252 kb on + strandat 22.252 kb on + strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.260 kb on - strandat 22.275 kb on + strandat 22.281 kb on + strandat 22.299 kb on + strandat 22.299 kb on + strandat 22.321 kb on + strandat 22.332 kb on + strandat 22.332 kb on + strandat 22.340 kb on - strandat 22.340 kb on - strandat 22.340 kb on - strandat 22.357 kb on + strandat 22.367 kb on + strandat 22.418 kb on - strand, within Atu5022at 22.440 kb on - strand, within Atu5022at 22.454 kb on - strand, within Atu5022at 22.486 kb on - strand, within Atu5022at 22.521 kb on + strand, within Atu5022at 22.521 kb on + strand, within Atu5022at 22.529 kb on - strand, within Atu5022at 22.529 kb on - strand, within Atu5022at 22.534 kb on - strand, within Atu5022at 22.618 kb on - strand, within Atu5022at 22.638 kb on + strand, within Atu5022at 22.638 kb on + strand, within Atu5022at 22.670 kb on + strand, within Atu5022at 22.673 kb on + strand, within Atu5022at 22.680 kb on + strand, within Atu5022at 22.680 kb on + strand, within Atu5022at 22.715 kb on - strand, within Atu5022at 22.717 kb on + strand, within Atu5022at 22.736 kb on - strand, within Atu5022at 22.736 kb on - strand, within Atu5022at 22.777 kb on + strand, within Atu5022at 22.815 kb on + strand, within Atu5022at 22.838 kb on + strand, within Atu5022at 22.846 kb on - strand, within Atu5022at 22.992 kb on + strand, within Atu5022at 23.003 kb on + strand, within Atu5022at 23.058 kb on + strand, within Atu5022at 23.058 kb on + strand, within Atu5022at 23.066 kb on - strand, within Atu5022at 23.066 kb on - strand, within Atu5022at 23.106 kb on + strand, within Atu5022at 23.120 kb on + strand, within Atu5022at 23.151 kb on + strand, within Atu5022at 23.151 kb on + strand, within Atu5022at 23.222 kb on + strand, within Atu5022at 23.225 kb on - strand, within Atu5022at 23.225 kb on - strand, within Atu5022at 23.228 kb on + strand, within Atu5022at 23.229 kb on + strand, within Atu5022at 23.236 kb on - strand, within Atu5022at 23.241 kb on - strand, within Atu5022at 23.261 kb on - strand, within Atu5022at 23.387 kb on + strand, within Atu5022at 23.403 kb on + strand, within Atu5022at 23.462 kb on - strand, within Atu5022at 23.463 kb on + strand, within Atu5022at 23.488 kb on + strand, within Atu5022at 23.488 kb on + strand, within Atu5022at 23.506 kb on - strand, within Atu5022at 23.520 kb on + strand, within Atu5022at 23.564 kb on + strand, within Atu5022at 23.564 kb on + strand, within Atu5022at 23.569 kb on + strand, within Atu5022at 23.574 kb on + strand, within Atu5022at 23.575 kb on + strand, within Atu5022at 23.583 kb on - strand, within Atu5022at 23.624 kb on + strand, within Atu5022at 23.627 kb on - strand, within Atu5022at 23.633 kb on + strand, within Atu5022at 23.678 kb on + strand, within Atu5022at 23.678 kb on + strand, within Atu5022at 23.678 kb on + strand, within Atu5022at 23.782 kb on - strand, within Atu5022at 23.848 kb on - strand, within Atu5022at 23.855 kb on + strand, within Atu5022at 23.863 kb on - strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.866 kb on + strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.874 kb on - strand, within Atu5022at 23.884 kb on - strand, within Atu5022at 23.888 kb on + strand, within Atu5022at 23.888 kb on + strand, within Atu5022at 23.896 kb on - strand, within Atu5022at 23.905 kb on + strand, within Atu5022at 23.933 kb on - strand, within Atu5022at 23.966 kb on + strandat 24.012 kb on - strandat 24.025 kb on + strandat 24.025 kb on + strandat 24.041 kb on - strandat 24.047 kb on + strandat 24.107 kb on + strandat 24.115 kb on - strandat 24.115 kb on - strandat 24.339 kb on + strandat 24.397 kb on + strandat 24.433 kb on + strandat 24.487 kb on + strandat 24.506 kb on - strandat 24.577 kb on + strandat 24.581 kb on - strandat 24.583 kb on + strandat 24.587 kb on + strandat 24.603 kb on - strand, within Atu5023at 24.624 kb on + strand, within Atu5023at 24.702 kb on + strand, within Atu5023at 24.703 kb on - strand, within Atu5023at 24.733 kb on + strand, within Atu5023at 24.743 kb on + strand, within Atu5023at 24.779 kb on + strand, within Atu5023at 24.801 kb on + strand, within Atu5023at 24.809 kb on - strand, within Atu5023at 24.829 kb on + strand, within Atu5023at 24.850 kb on + strand, within Atu5023at 24.858 kb on - strand, within Atu5023at 24.890 kb on - strand, within Atu5023at 24.894 kb on + strand, within Atu5023at 24.894 kb on + strand, within Atu5023at 24.894 kb on + strand, within Atu5023at 24.902 kb on - strand, within Atu5023at 24.902 kb on - strand, within Atu5023at 24.948 kb on - strand, within Atu5023at 25.000 kb on + strand, within Atu5023at 25.040 kb on + strand, within Atu5023at 25.056 kb on + strand, within Atu5023at 25.064 kb on - strand, within Atu5023at 25.064 kb on - strand, within Atu5023

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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21,230 + -0.6
21,233 - +1.8
21,250 + +0.2
21,308 + -1.8
21,313 + -0.6
21,316 - +0.5
21,316 - +0.1
21,410 + -0.8
21,418 - -0.2
21,434 - Atu5021 0.11 -0.5
21,458 - Atu5021 0.14 -0.9
21,497 + Atu5021 0.18 -0.4
21,505 - Atu5021 0.19 +0.6
21,507 + Atu5021 0.20 +0.5
21,520 - Atu5021 0.21 +0.2
21,520 - Atu5021 0.21 -0.3
21,557 - Atu5021 0.25 +2.4
21,619 + Atu5021 0.32 -0.8
21,652 + Atu5021 0.36 -1.3
21,652 + Atu5021 0.36 -0.1
21,652 + Atu5021 0.36 +0.1
21,652 + Atu5021 0.36 -0.0
21,660 - Atu5021 0.37 +0.6
21,660 - Atu5021 0.37 -1.5
21,684 - Atu5021 0.39 +0.6
21,707 + Atu5021 0.42 -0.5
21,725 - Atu5021 0.44 -0.8
21,766 - Atu5021 0.48 +0.8
21,843 - Atu5021 0.57 -0.5
21,879 - Atu5021 0.61 +0.6
22,128 - Atu5021 0.89 -1.1
22,130 - Atu5021 0.89 -0.2
22,167 + +0.8
22,252 + -0.6
22,252 + -0.4
22,260 - +0.6
22,260 - +0.6
22,260 - -0.1
22,260 - +0.8
22,275 + -0.6
22,281 + -0.8
22,299 + +0.1
22,299 + -0.4
22,321 + -0.4
22,332 + +0.6
22,332 + -0.5
22,340 - +0.1
22,340 - -0.5
22,340 - +0.3
22,357 + +0.6
22,367 + +0.5
22,418 - Atu5022 0.10 +0.2
22,440 - Atu5022 0.11 -0.8
22,454 - Atu5022 0.12 +1.1
22,486 - Atu5022 0.14 -2.9
22,521 + Atu5022 0.15 +0.2
22,521 + Atu5022 0.15 +1.0
22,529 - Atu5022 0.16 -0.1
22,529 - Atu5022 0.16 -0.3
22,534 - Atu5022 0.16 -0.4
22,618 - Atu5022 0.21 +0.3
22,638 + Atu5022 0.22 +0.4
22,638 + Atu5022 0.22 +0.4
22,670 + Atu5022 0.23 -0.8
22,673 + Atu5022 0.23 +0.2
22,680 + Atu5022 0.24 -0.5
22,680 + Atu5022 0.24 -0.6
22,715 - Atu5022 0.26 +1.1
22,717 + Atu5022 0.26 +0.1
22,736 - Atu5022 0.27 +0.6
22,736 - Atu5022 0.27 +0.3
22,777 + Atu5022 0.29 +0.4
22,815 + Atu5022 0.31 +0.8
22,838 + Atu5022 0.32 +1.2
22,846 - Atu5022 0.33 -1.0
22,992 + Atu5022 0.40 +0.0
23,003 + Atu5022 0.41 +0.1
23,058 + Atu5022 0.44 -1.6
23,058 + Atu5022 0.44 -0.4
23,066 - Atu5022 0.44 -0.7
23,066 - Atu5022 0.44 +0.1
23,106 + Atu5022 0.46 -1.0
23,120 + Atu5022 0.47 +0.2
23,151 + Atu5022 0.49 -0.9
23,151 + Atu5022 0.49 +0.5
23,222 + Atu5022 0.52 -0.9
23,225 - Atu5022 0.53 -0.8
23,225 - Atu5022 0.53 -0.8
23,228 + Atu5022 0.53 -0.6
23,229 + Atu5022 0.53 +0.4
23,236 - Atu5022 0.53 +0.2
23,241 - Atu5022 0.53 -0.6
23,261 - Atu5022 0.54 +0.4
23,387 + Atu5022 0.61 +0.7
23,403 + Atu5022 0.62 -0.7
23,462 - Atu5022 0.65 +0.1
23,463 + Atu5022 0.65 -0.4
23,488 + Atu5022 0.66 -0.0
23,488 + Atu5022 0.66 -0.5
23,506 - Atu5022 0.67 -0.2
23,520 + Atu5022 0.68 +1.1
23,564 + Atu5022 0.70 +0.2
23,564 + Atu5022 0.70 -0.2
23,569 + Atu5022 0.71 +1.2
23,574 + Atu5022 0.71 +0.9
23,575 + Atu5022 0.71 -0.3
23,583 - Atu5022 0.71 -1.4
23,624 + Atu5022 0.74 +0.0
23,627 - Atu5022 0.74 +0.1
23,633 + Atu5022 0.74 -0.2
23,678 + Atu5022 0.76 +0.4
23,678 + Atu5022 0.76 +0.5
23,678 + Atu5022 0.76 +0.8
23,782 - Atu5022 0.82 +0.2
23,848 - Atu5022 0.85 +0.5
23,855 + Atu5022 0.86 -0.4
23,863 - Atu5022 0.86 -1.4
23,866 + Atu5022 0.86 -0.2
23,866 + Atu5022 0.86 +0.7
23,866 + Atu5022 0.86 +0.9
23,866 + Atu5022 0.86 +1.0
23,866 + Atu5022 0.86 -0.2
23,874 - Atu5022 0.87 +0.9
23,874 - Atu5022 0.87 -2.2
23,874 - Atu5022 0.87 +1.6
23,874 - Atu5022 0.87 +0.5
23,884 - Atu5022 0.87 -0.1
23,888 + Atu5022 0.87 +0.0
23,888 + Atu5022 0.87 -0.2
23,896 - Atu5022 0.88 -0.9
23,905 + Atu5022 0.88 +0.5
23,933 - Atu5022 0.90 +2.2
23,966 + +0.5
24,012 - +0.2
24,025 + +0.3
24,025 + -0.1
24,041 - -1.9
24,047 + +0.4
24,107 + -0.1
24,115 - -0.9
24,115 - -0.5
24,339 + -0.6
24,397 + +0.6
24,433 + +2.2
24,487 + -0.1
24,506 - +0.3
24,577 + +0.7
24,581 - -0.8
24,583 + +0.1
24,587 + +1.0
24,603 - Atu5023 0.10 -1.6
24,624 + Atu5023 0.11 -0.4
24,702 + Atu5023 0.16 -2.2
24,703 - Atu5023 0.16 +0.4
24,733 + Atu5023 0.18 +0.4
24,743 + Atu5023 0.18 -1.0
24,779 + Atu5023 0.20 -0.3
24,801 + Atu5023 0.22 +0.6
24,809 - Atu5023 0.22 -2.5
24,829 + Atu5023 0.23 -0.3
24,850 + Atu5023 0.24 +0.1
24,858 - Atu5023 0.25 -0.1
24,890 - Atu5023 0.27 +0.1
24,894 + Atu5023 0.27 +0.1
24,894 + Atu5023 0.27 -0.5
24,894 + Atu5023 0.27 -1.7
24,902 - Atu5023 0.27 +0.5
24,902 - Atu5023 0.27 -0.7
24,948 - Atu5023 0.30 -0.7
25,000 + Atu5023 0.33 -1.7
25,040 + Atu5023 0.35 -0.5
25,056 + Atu5023 0.36 +1.2
25,064 - Atu5023 0.37 -2.0
25,064 - Atu5023 0.37 -0.5

Or see this region's nucleotide sequence