Strain Fitness in Agrobacterium fabrum C58 around Atu4561

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,706,550	-		Atu4560	0.28	-0.8
1,706,563	+		Atu4560	0.29	-0.2
1,706,586	+		Atu4560	0.31	-0.2
1,706,607	+		Atu4560	0.32	-0.6
1,706,848	+		Atu4560	0.50	+1.4
1,706,967	+		Atu4560	0.59	+0.4
1,707,056	+		Atu4560	0.65	+0.4
1,707,064	-		Atu4560	0.66	+0.5
1,707,147	+		Atu4560	0.72	+1.1
1,707,155	-		Atu4560	0.73	+0.0
1,707,155	-		Atu4560	0.73	-0.3
1,707,155	-		Atu4560	0.73	+0.4
1,707,360	-		Atu4560	0.88	+0.4
1,707,360	-		Atu4560	0.88	+0.4
1,707,393	+				-0.2
1,707,502	+				+0.4
1,707,502	+				-0.1
1,707,505	-				+0.6
1,707,587	-				+0.4
1,707,602	+				-0.6
1,707,832	+		Atu4561	0.28	+1.2
1,707,838	-		Atu4561	0.29	+1.5
1,707,838	-		Atu4561	0.29	+0.2
1,707,906	+		Atu4561	0.35	+0.1
1,707,935	-		Atu4561	0.37	+0.6
1,707,974	-		Atu4561	0.41	+0.2
1,708,120	+		Atu4561	0.54	-0.2
1,708,156	+		Atu4561	0.58	-0.7
1,708,164	-		Atu4561	0.58	+0.5
1,708,222	-		Atu4561	0.64	+1.3
1,708,234	+		Atu4561	0.65	-0.4
1,708,277	-		Atu4561	0.69	-0.2
1,708,407	+		Atu4561	0.81	+0.3
1,708,410	-		Atu4561	0.81	-0.1
1,708,468	-		Atu4561	0.86	-0.1
1,708,529	-				-0.7
1,708,540	+				-1.0
1,708,572	+				-0.1
1,708,601	-				-1.2
1,708,655	-				-0.1
1,708,668	-				+1.3
1,708,793	+				-0.3
1,708,796	-				+0.1
1,708,801	-				-1.2
1,708,894	+		Atu4562	0.10	+0.4
1,708,903	+		Atu4562	0.11	+0.7
1,708,928	-		Atu4562	0.12	+0.2
1,708,952	-		Atu4562	0.13	+0.4
1,708,967	-		Atu4562	0.13	-0.1
1,708,976	+		Atu4562	0.14	+0.5
1,709,064	+		Atu4562	0.17	-0.9
1,709,079	-		Atu4562	0.18	+0.3
1,709,218	+		Atu4562	0.23	+0.1
1,709,251	+		Atu4562	0.24	+0.1
1,709,251	+		Atu4562	0.24	-1.4
1,709,349	+		Atu4562	0.28	+0.3
1,709,577	+		Atu4562	0.37	-0.5
1,709,596	-		Atu4562	0.38	+0.6
1,709,596	-		Atu4562	0.38	-0.3