Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3166 and Atu3167 overlap by 4 nucleotides Atu3167 and Atu3168 are separated by 123 nucleotides
Atu3166: Atu3166 - fructokinase, at 175,837 to 176,826
Atu3166
Atu3167: Atu3167 - tagatose 6-phosphate kinase, at 176,823 to 178,100
Atu3167
Atu3168: Atu3168 - sorbitol/mannitol ABC transporter permease, at 178,224 to 179,096
Atu3168
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 175.828 kb on - strand at 175.828 kb on - strand at 175.830 kb on - strand at 175.833 kb on + strand at 175.855 kb on - strand at 175.908 kb on + strand at 176.072 kb on - strand, within Atu3166 at 176.107 kb on + strand, within Atu3166 at 176.271 kb on - strand, within Atu3166 at 176.356 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.399 kb on - strand, within Atu3166 at 176.420 kb on - strand, within Atu3166 at 176.566 kb on + strand, within Atu3166 at 176.581 kb on + strand, within Atu3166 at 176.614 kb on - strand, within Atu3166 at 176.665 kb on - strand, within Atu3166 at 176.707 kb on + strand, within Atu3166 at 176.750 kb on + strand at 176.883 kb on + strand at 176.888 kb on + strand at 176.893 kb on + strand at 176.893 kb on + strand at 176.893 kb on + strand at 176.905 kb on + strand at 176.905 kb on + strand at 176.905 kb on + strand at 176.906 kb on - strand at 176.913 kb on - strand at 176.971 kb on + strand, within Atu3167 at 176.998 kb on - strand, within Atu3167 at 176.998 kb on - strand, within Atu3167 at 177.015 kb on - strand, within Atu3167 at 177.043 kb on - strand, within Atu3167 at 177.063 kb on - strand, within Atu3167 at 177.083 kb on - strand, within Atu3167 at 177.112 kb on - strand, within Atu3167 at 177.161 kb on + strand, within Atu3167 at 177.176 kb on - strand, within Atu3167 at 177.178 kb on + strand, within Atu3167 at 177.283 kb on - strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.378 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.421 kb on + strand, within Atu3167 at 177.460 kb on + strand, within Atu3167 at 177.468 kb on - strand, within Atu3167 at 177.477 kb on - strand, within Atu3167 at 177.628 kb on + strand, within Atu3167 at 177.794 kb on - strand, within Atu3167 at 177.827 kb on - strand, within Atu3167 at 177.828 kb on - strand, within Atu3167 at 177.885 kb on + strand, within Atu3167 at 177.932 kb on + strand, within Atu3167 at 177.940 kb on - strand, within Atu3167 at 178.031 kb on + strand at 178.031 kb on + strand at 178.089 kb on + strand at 178.246 kb on + strand at 178.254 kb on - strand at 178.256 kb on + strand at 178.264 kb on - strand at 178.297 kb on - strand at 178.359 kb on + strand, within Atu3168 at 178.390 kb on - strand, within Atu3168 at 178.417 kb on + strand, within Atu3168 at 178.735 kb on + strand, within Atu3168 at 178.737 kb on - strand, within Atu3168 at 178.737 kb on - strand, within Atu3168 at 178.743 kb on - strand, within Atu3168 at 178.796 kb on - strand, within Atu3168
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 175,828 - -0.6 175,828 - -0.7 175,830 - -1.5 175,833 + -1.0 175,855 - +0.2 175,908 + +0.3 176,072 - Atu3166 0.24 +0.1 176,107 + Atu3166 0.27 -0.8 176,271 - Atu3166 0.44 +0.2 176,356 - Atu3166 0.52 -0.0 176,365 - Atu3166 0.53 +0.7 176,365 - Atu3166 0.53 +0.3 176,380 + Atu3166 0.55 -1.0 176,380 + Atu3166 0.55 -1.6 176,399 - Atu3166 0.57 +0.9 176,420 - Atu3166 0.59 -0.3 176,566 + Atu3166 0.74 -0.2 176,581 + Atu3166 0.75 +1.5 176,614 - Atu3166 0.78 +0.1 176,665 - Atu3166 0.84 -0.1 176,707 + Atu3166 0.88 -0.0 176,750 + +0.0 176,883 + +0.2 176,888 + -1.7 176,893 + +0.5 176,893 + -0.0 176,893 + +1.0 176,905 + +0.7 176,905 + +0.3 176,905 + -0.6 176,906 - +0.8 176,913 - +1.1 176,971 + Atu3167 0.12 -2.9 176,998 - Atu3167 0.14 +0.4 176,998 - Atu3167 0.14 +1.2 177,015 - Atu3167 0.15 -0.4 177,043 - Atu3167 0.17 +0.4 177,063 - Atu3167 0.19 +0.3 177,083 - Atu3167 0.20 +0.4 177,112 - Atu3167 0.23 -1.7 177,161 + Atu3167 0.26 -0.0 177,176 - Atu3167 0.28 -1.9 177,178 + Atu3167 0.28 -0.5 177,283 - Atu3167 0.36 +0.2 177,377 + Atu3167 0.43 -0.7 177,377 + Atu3167 0.43 -0.3 177,378 - Atu3167 0.43 -0.5 177,385 - Atu3167 0.44 -0.4 177,385 - Atu3167 0.44 -1.3 177,421 + Atu3167 0.47 +0.1 177,460 + Atu3167 0.50 -0.8 177,468 - Atu3167 0.50 +0.2 177,477 - Atu3167 0.51 +0.7 177,628 + Atu3167 0.63 -1.3 177,794 - Atu3167 0.76 -0.5 177,827 - Atu3167 0.79 -0.9 177,828 - Atu3167 0.79 -0.4 177,885 + Atu3167 0.83 -0.0 177,932 + Atu3167 0.87 -0.6 177,940 - Atu3167 0.87 -0.3 178,031 + +0.7 178,031 + +0.4 178,089 + -0.4 178,246 + -0.6 178,254 - -0.1 178,256 + +0.4 178,264 - -0.3 178,297 - -0.8 178,359 + Atu3168 0.15 +0.5 178,390 - Atu3168 0.19 +0.0 178,417 + Atu3168 0.22 +0.0 178,735 + Atu3168 0.59 -0.3 178,737 - Atu3168 0.59 +0.4 178,737 - Atu3168 0.59 -1.2 178,743 - Atu3168 0.59 -0.6 178,796 - Atu3168 0.66 -0.1
Or see this region's nucleotide sequence