Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1328 and Atu1329 are separated by 13 nucleotides Atu1329 and Atu1330 are separated by 6 nucleotides Atu1330 and Atu1331 are separated by 12 nucleotides Atu1331 and Atu1332 are separated by 25 nucleotides
Atu1328: Atu1328 - hypothetical protein, at 1,315,775 to 1,316,212
Atu1328
Atu1329: Atu1329 - leucyl/phenylalanyl-tRNA-protein transferase, at 1,316,226 to 1,316,840
Atu1329
Atu1330: Atu1330 - acetyl-CoA carboxylase, biotin carboxylase, at 1,316,847 to 1,318,193
Atu1330
Atu1331: Atu1331 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 1,318,206 to 1,318,694
Atu1331
Atu1332: Atu1332 - 3-dehydroquinate dehydratase, at 1,318,720 to 1,319,157
Atu1332
Position (kb) 1316
1317
1318
1319 Strain fitness (log2 ratio) -1
0
1
2 at 1316.183 kb on + strand at 1316.381 kb on + strand, within Atu1329 at 1316.477 kb on + strand, within Atu1329 at 1316.489 kb on + strand, within Atu1329 at 1316.533 kb on + strand, within Atu1329 at 1316.596 kb on - strand, within Atu1329 at 1316.631 kb on - strand, within Atu1329 at 1316.667 kb on - strand, within Atu1329 at 1316.722 kb on - strand, within Atu1329
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,316,183 + -0.9 1,316,381 + Atu1329 0.25 -0.0 1,316,477 + Atu1329 0.41 +0.1 1,316,489 + Atu1329 0.43 +1.9 1,316,533 + Atu1329 0.50 +0.2 1,316,596 - Atu1329 0.60 +0.2 1,316,631 - Atu1329 0.66 +0.2 1,316,667 - Atu1329 0.72 +1.8 1,316,722 - Atu1329 0.81 -0.2
Or see this region's nucleotide sequence