Strain Fitness in Agrobacterium fabrum C58 around Atu1035

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1033 and Atu1034 are separated by 206 nucleotidesAtu1034 and Atu1035 overlap by 4 nucleotidesAtu1035 and Atu1036 are separated by 83 nucleotides Atu1033: Atu1033 - holo-(acyl-carrier Protein) synthase, at 1,026,081 to 1,026,485 Atu1033 Atu1034: Atu1034 - prokaryotic type I signal peptidase, at 1,026,692 to 1,027,438 Atu1034 Atu1035: Atu1035 - ribonuclease III, at 1,027,435 to 1,028,154 Atu1035 Atu1036: Atu1036 - GTP-binding protein, Era family, at 1,028,238 to 1,029,179 Atu1036 Position (kb) 1027 1028 1029Strain fitness (log2 ratio) -1 0 1at 1027.427 kb on + strandat 1027.427 kb on + strandat 1027.427 kb on + strandat 1028.158 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,027,427 + -0.1
1,027,427 + -0.4
1,027,427 + +0.6
1,028,158 + -0.6

Or see this region's nucleotide sequence