Strain Fitness in Agrobacterium fabrum C58 around Atu0775

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0774 and Atu0775 are separated by 92 nucleotidesAtu0775 and Atu0776 overlap by 4 nucleotidesAtu0776 and Atu0777 are separated by 176 nucleotidesAtu0777 and Atu0778 are separated by 14 nucleotides Atu0774: Atu0774 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 769,735 to 770,781 Atu0774 Atu0775: Atu0775 - homoserine kinase, at 770,874 to 771,842 Atu0775 Atu0776: Atu0776 - ribonuclease H, at 771,839 to 772,279 Atu0776 Atu0777: Atu0777 - hypothetical protein, at 772,456 to 772,764 Atu0777 Atu0778: Atu0778 - hypothetical protein, at 772,779 to 775,319 Atu0778 Position (kb) 770 771 772Strain fitness (log2 ratio) -2 -1 0 1at 770.696 kb on + strandat 772.254 kb on + strandat 772.262 kb on - strandat 772.292 kb on - strandat 772.309 kb on - strandat 772.318 kb on - strandat 772.482 kb on - strandat 772.595 kb on - strand, within Atu0777at 772.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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770,696 + -1.0
772,254 + -1.3
772,262 - -1.2
772,292 - +0.7
772,309 - +0.4
772,318 - -1.0
772,482 - +0.3
772,595 - Atu0777 0.45 -2.1
772,814 + -1.1

Or see this region's nucleotide sequence