Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0660 and Atu0661 overlap by 4 nucleotides Atu0661 and Atu0662 are separated by 112 nucleotides
Atu0660: Atu0660 - hydrolase, at 654,495 to 655,241
Atu0660
Atu0661: Atu0661 - glycosyltransferase, at 655,238 to 656,575
Atu0661
Atu0662: Atu0662 - transcriptional regulator, GntR family, at 656,688 to 657,461
Atu0662
Position (kb) 655
656
657 Strain fitness (log2 ratio) -2
-1
0
1
2 at 654.315 kb on - strand at 654.328 kb on - strand at 654.330 kb on - strand at 654.339 kb on - strand at 654.422 kb on - strand at 654.450 kb on - strand at 654.504 kb on + strand at 654.504 kb on + strand at 654.506 kb on + strand at 654.524 kb on - strand at 654.598 kb on + strand, within Atu0660 at 654.606 kb on - strand, within Atu0660 at 654.660 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.946 kb on + strand, within Atu0660 at 654.977 kb on + strand, within Atu0660 at 654.980 kb on + strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.989 kb on - strand, within Atu0660 at 655.034 kb on - strand, within Atu0660 at 655.104 kb on - strand, within Atu0660 at 655.113 kb on + strand, within Atu0660 at 655.127 kb on - strand, within Atu0660 at 655.349 kb on - strand at 655.397 kb on - strand, within Atu0661 at 655.399 kb on + strand, within Atu0661 at 655.407 kb on - strand, within Atu0661 at 655.602 kb on - strand, within Atu0661 at 655.642 kb on - strand, within Atu0661 at 655.791 kb on - strand, within Atu0661 at 655.806 kb on + strand, within Atu0661 at 655.813 kb on - strand, within Atu0661 at 655.814 kb on - strand, within Atu0661 at 655.841 kb on + strand, within Atu0661 at 655.847 kb on + strand, within Atu0661 at 655.953 kb on - strand, within Atu0661 at 656.059 kb on + strand, within Atu0661 at 656.084 kb on - strand, within Atu0661 at 656.175 kb on + strand, within Atu0661 at 656.208 kb on + strand, within Atu0661 at 656.232 kb on + strand, within Atu0661 at 656.357 kb on - strand, within Atu0661 at 656.396 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.501 kb on + strand at 656.577 kb on + strand at 656.739 kb on + strand at 657.004 kb on - strand, within Atu0662 at 657.012 kb on + strand, within Atu0662 at 657.012 kb on + strand, within Atu0662 at 657.044 kb on - strand, within Atu0662 at 657.092 kb on - strand, within Atu0662 at 657.266 kb on - strand, within Atu0662 at 657.285 kb on + strand, within Atu0662 at 657.325 kb on - strand, within Atu0662 at 657.335 kb on + strand, within Atu0662 at 657.429 kb on - strand at 657.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 654,315 - -0.3 654,328 - +0.1 654,330 - +0.7 654,339 - +0.2 654,422 - -0.5 654,450 - +0.8 654,504 + +0.3 654,504 + +0.1 654,506 + -0.1 654,524 - +0.5 654,598 + Atu0660 0.14 -0.6 654,606 - Atu0660 0.15 -0.6 654,660 + Atu0660 0.22 +1.2 654,930 + Atu0660 0.58 -0.5 654,930 + Atu0660 0.58 -1.7 654,946 + Atu0660 0.60 +1.4 654,977 + Atu0660 0.65 -0.7 654,980 + Atu0660 0.65 +0.2 654,988 - Atu0660 0.66 -0.4 654,988 - Atu0660 0.66 +0.1 654,989 - Atu0660 0.66 +0.7 655,034 - Atu0660 0.72 +1.2 655,104 - Atu0660 0.82 +0.2 655,113 + Atu0660 0.83 +0.2 655,127 - Atu0660 0.85 -1.9 655,349 - +0.7 655,397 - Atu0661 0.12 +1.0 655,399 + Atu0661 0.12 +0.2 655,407 - Atu0661 0.13 +0.3 655,602 - Atu0661 0.27 -0.5 655,642 - Atu0661 0.30 -0.5 655,791 - Atu0661 0.41 -0.1 655,806 + Atu0661 0.42 -0.5 655,813 - Atu0661 0.43 +0.6 655,814 - Atu0661 0.43 +0.3 655,841 + Atu0661 0.45 +0.2 655,847 + Atu0661 0.46 +0.4 655,953 - Atu0661 0.53 -0.1 656,059 + Atu0661 0.61 +0.1 656,084 - Atu0661 0.63 +0.3 656,175 + Atu0661 0.70 +0.1 656,208 + Atu0661 0.72 +0.8 656,232 + Atu0661 0.74 -0.4 656,357 - Atu0661 0.84 -0.5 656,396 - Atu0661 0.87 -0.5 656,426 - Atu0661 0.89 -0.4 656,426 - Atu0661 0.89 -0.3 656,426 - Atu0661 0.89 -0.5 656,501 + +0.5 656,577 + -0.2 656,739 + +0.1 657,004 - Atu0662 0.41 +0.5 657,012 + Atu0662 0.42 -0.3 657,012 + Atu0662 0.42 +1.8 657,044 - Atu0662 0.46 +1.5 657,092 - Atu0662 0.52 -0.0 657,266 - Atu0662 0.75 +0.2 657,285 + Atu0662 0.77 -0.6 657,325 - Atu0662 0.82 -0.7 657,335 + Atu0662 0.84 +0.4 657,429 - +0.8 657,469 - +0.0
Or see this region's nucleotide sequence