Experiment: an_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23905 and AMB_RS23910 are separated by 127 nucleotides AMB_RS23910 and AMB_RS04710 are separated by 339 nucleotides AMB_RS04710 and AMB_RS23915 overlap by 4 nucleotides
AMB_RS23905: AMB_RS23905 - EAL domain-containing protein, at 983,699 to 984,457
_RS23905
AMB_RS23910: AMB_RS23910 - DUF1465 domain-containing protein, at 984,585 to 985,049
_RS23910
AMB_RS04710: AMB_RS04710 - type II toxin-antitoxin system RelE/ParE family toxin, at 985,389 to 985,715
_RS04710
AMB_RS23915: AMB_RS23915 - XRE family transcriptional regulator, at 985,712 to 985,993
_RS23915
Position (kb) 984
985
986 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 983.596 kb on + strand at 983.622 kb on - strand at 983.633 kb on + strand at 983.634 kb on - strand at 983.634 kb on - strand at 983.971 kb on + strand, within AMB_RS23905 at 983.971 kb on + strand, within AMB_RS23905 at 983.971 kb on + strand, within AMB_RS23905 at 984.061 kb on + strand, within AMB_RS23905 at 984.061 kb on + strand, within AMB_RS23905 at 984.062 kb on - strand, within AMB_RS23905 at 984.086 kb on - strand, within AMB_RS23905 at 984.086 kb on - strand, within AMB_RS23905 at 984.149 kb on + strand, within AMB_RS23905 at 984.149 kb on + strand, within AMB_RS23905 at 984.149 kb on + strand, within AMB_RS23905 at 984.151 kb on + strand, within AMB_RS23905 at 984.151 kb on + strand, within AMB_RS23905 at 984.152 kb on - strand, within AMB_RS23905 at 984.152 kb on - strand, within AMB_RS23905 at 984.152 kb on - strand, within AMB_RS23905 at 984.152 kb on - strand, within AMB_RS23905 at 984.169 kb on - strand, within AMB_RS23905 at 984.304 kb on + strand, within AMB_RS23905 at 984.304 kb on + strand, within AMB_RS23905 at 984.342 kb on + strand, within AMB_RS23905 at 984.343 kb on - strand, within AMB_RS23905 at 984.350 kb on + strand, within AMB_RS23905 at 984.403 kb on + strand at 984.404 kb on - strand at 984.622 kb on - strand at 984.636 kb on - strand, within AMB_RS23910 at 984.820 kb on + strand, within AMB_RS23910 at 984.875 kb on + strand, within AMB_RS23910 at 984.875 kb on + strand, within AMB_RS23910 at 984.875 kb on + strand, within AMB_RS23910 at 984.876 kb on - strand, within AMB_RS23910 at 985.034 kb on - strand at 985.034 kb on - strand at 985.034 kb on - strand at 985.092 kb on - strand at 985.168 kb on + strand at 985.169 kb on - strand at 985.169 kb on - strand at 985.173 kb on + strand at 985.346 kb on + strand at 985.346 kb on + strand at 985.346 kb on + strand at 985.347 kb on - strand at 985.350 kb on + strand at 985.350 kb on + strand at 985.350 kb on + strand at 985.382 kb on + strand at 985.382 kb on + strand at 985.383 kb on - strand at 985.455 kb on - strand, within AMB_RS04710 at 985.511 kb on + strand, within AMB_RS04710 at 985.511 kb on + strand, within AMB_RS04710 at 985.512 kb on - strand, within AMB_RS04710 at 985.512 kb on - strand, within AMB_RS04710 at 985.512 kb on - strand, within AMB_RS04710 at 985.550 kb on - strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.596 kb on + strand, within AMB_RS04710 at 985.738 kb on + strand at 985.773 kb on - strand, within AMB_RS23915 at 985.839 kb on + strand, within AMB_RS23915 at 985.840 kb on - strand, within AMB_RS23915
Per-strain Table
Position Strand Gene LocusTag Fraction an_mag_3 remove 983,596 + +0.7 983,622 - +0.5 983,633 + -0.5 983,634 - +0.9 983,634 - -1.1 983,971 + AMB_RS23905 0.36 +0.4 983,971 + AMB_RS23905 0.36 +0.4 983,971 + AMB_RS23905 0.36 -0.6 984,061 + AMB_RS23905 0.48 -2.1 984,061 + AMB_RS23905 0.48 -1.1 984,062 - AMB_RS23905 0.48 -0.6 984,086 - AMB_RS23905 0.51 +0.4 984,086 - AMB_RS23905 0.51 -0.6 984,149 + AMB_RS23905 0.59 -0.9 984,149 + AMB_RS23905 0.59 -4.0 984,149 + AMB_RS23905 0.59 -2.7 984,151 + AMB_RS23905 0.60 -1.1 984,151 + AMB_RS23905 0.60 -0.8 984,152 - AMB_RS23905 0.60 -1.1 984,152 - AMB_RS23905 0.60 -0.6 984,152 - AMB_RS23905 0.60 -4.1 984,152 - AMB_RS23905 0.60 -0.6 984,169 - AMB_RS23905 0.62 +0.4 984,304 + AMB_RS23905 0.80 -0.6 984,304 + AMB_RS23905 0.80 +0.4 984,342 + AMB_RS23905 0.85 -1.6 984,343 - AMB_RS23905 0.85 +0.4 984,350 + AMB_RS23905 0.86 -1.9 984,403 + -1.1 984,404 - -1.6 984,622 - -0.6 984,636 - AMB_RS23910 0.11 +0.4 984,820 + AMB_RS23910 0.51 -2.8 984,875 + AMB_RS23910 0.62 +0.4 984,875 + AMB_RS23910 0.62 -3.2 984,875 + AMB_RS23910 0.62 -2.6 984,876 - AMB_RS23910 0.63 +0.4 985,034 - +0.4 985,034 - -0.4 985,034 - -0.6 985,092 - -1.7 985,168 + -0.6 985,169 - -0.6 985,169 - -1.6 985,173 + -4.7 985,346 + -2.6 985,346 + -0.6 985,346 + -0.4 985,347 - -1.6 985,350 + +0.4 985,350 + +1.7 985,350 + +0.0 985,382 + -1.4 985,382 + -1.6 985,383 - -2.6 985,455 - AMB_RS04710 0.20 +0.4 985,511 + AMB_RS04710 0.37 -0.7 985,511 + AMB_RS04710 0.37 -0.6 985,512 - AMB_RS04710 0.38 -1.6 985,512 - AMB_RS04710 0.38 +0.0 985,512 - AMB_RS04710 0.38 -0.6 985,550 - AMB_RS04710 0.49 -0.4 985,596 + AMB_RS04710 0.63 +0.4 985,596 + AMB_RS04710 0.63 -0.6 985,596 + AMB_RS04710 0.63 +0.4 985,596 + AMB_RS04710 0.63 -1.2 985,738 + -0.9 985,773 - AMB_RS23915 0.22 -0.1 985,839 + AMB_RS23915 0.45 -0.6 985,840 - AMB_RS23915 0.45 -1.6
Or see this region's nucleotide sequence